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The map label for this gene is arnC [H]

Identifier: 159897290

GI number: 159897290

Start: 864319

End: 865137

Strand: Reverse

Name: arnC [H]

Synonym: Haur_0761

Alternate gene names: 159897290

Gene position: 865137-864319 (Counterclockwise)

Preceding gene: 159897291

Following gene: 159897289

Centisome position: 13.63

GC content: 46.52

Gene sequence:

>819_bases
ATGCTTCAGCCAACGCCAACCAACGCCCAAACAGCCAGCGGGCAAGACCCCGATCTTTCAGTGATTATCCCCTGTTTCAA
CGAACAAAAACGGATTATCCCAACGATCAATACAATCATCGACTACTTGAATAGCCTAGGTCGCTCGTGGGAATTAATCG
TCAGCGATGATGGCTCCAGCGATCAAACCATCAGTTTAGTTGAAGCTCAGCGCTACCCCAACCTCACTATCATCAAGAGC
ACGCGCAACTATGGCAAAGGTCATGCGGTTCGGGCAGGCATTATCGCGGCTAGAGGCAATTTTATTTTGTTCACCGATGC
TGATAACGCCACACCAATCACTGAGCTGGATACCATGCTGCCGTTGTTGGAGTTAGGCAGTTATGACATCGCGATTGGCT
CACGTGCCAAGCAATTGCTTCAAACCAAACAACGCAGTTTAGGCCGCTGTATGATGAGTGCAGGGCTGCGCGTGATCGTT
GAACATGGGCTAAAATTGAATATTCACGATAGTCAATGTGGCTTCAAGCTGTTTCATCGCACCGTTGCTAAACACCTTGC
CCAAGTGCAAACGATTAATAGCTTTGCCTTCGATCTCGAATTATTGGTGATTGCCGATATTTTTGGCTATCAAACAATTG
AAATTCCAGTTGATTGGGTTGATATTGCTGGTTCGAAAGTTCATCCCATTCGCGATGCGTATCAATTTCTGCGCGATATT
ATGTCGATTCAAATCAATCATTGGCGTGGGCGTTACCCAAGTTCATTGCCTAAGACCCCAAAATCTAAATCGCCTCAATC
CAACCACTGGTTTGCCTAA

Upstream 100 bases:

>100_bases
AACGGGCTATCCCAGGGCGGACTGATAGACCATATCATCCAAGGGCTATCAGATCTATGCTGCCAACACGCAACTTTTAA
TTATTAACGGGATTGCCACC

Downstream 100 bases:

>100_bases
GCCAGTGGTTAGATTGTTAATTGCGCCGCTTCACCCGCATAGTTGCAGCCACGTACTCCCCCAAGGTAGCCTCAAGTCTA
GGTTAAGATAGTCCATCCGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLQPTPTNAQTASGQDPDLSVIIPCFNEQKRIIPTINTIIDYLNSLGRSWELIVSDDGSSDQTISLVEAQRYPNLTIIKS
TRNYGKGHAVRAGIIAARGNFILFTDADNATPITELDTMLPLLELGSYDIAIGSRAKQLLQTKQRSLGRCMMSAGLRVIV
EHGLKLNIHDSQCGFKLFHRTVAKHLAQVQTINSFAFDLELLVIADIFGYQTIEIPVDWVDIAGSKVHPIRDAYQFLRDI
MSIQINHWRGRYPSSLPKTPKSKSPQSNHWFA

Sequences:

>Translated_272_residues
MLQPTPTNAQTASGQDPDLSVIIPCFNEQKRIIPTINTIIDYLNSLGRSWELIVSDDGSSDQTISLVEAQRYPNLTIIKS
TRNYGKGHAVRAGIIAARGNFILFTDADNATPITELDTMLPLLELGSYDIAIGSRAKQLLQTKQRSLGRCMMSAGLRVIV
EHGLKLNIHDSQCGFKLFHRTVAKHLAQVQTINSFAFDLELLVIADIFGYQTIEIPVDWVDIAGSKVHPIRDAYQFLRDI
MSIQINHWRGRYPSSLPKTPKSKSPQSNHWFA
>Mature_272_residues
MLQPTPTNAQTASGQDPDLSVIIPCFNEQKRIIPTINTIIDYLNSLGRSWELIVSDDGSSDQTISLVEAQRYPNLTIIKS
TRNYGKGHAVRAGIIAARGNFILFTDADNATPITELDTMLPLLELGSYDIAIGSRAKQLLQTKQRSLGRCMMSAGLRVIV
EHGLKLNIHDSQCGFKLFHRTVAKHLAQVQTINSFAFDLELLVIADIFGYQTIEIPVDWVDIAGSKVHPIRDAYQFLRDI
MSIQINHWRGRYPSSLPKTPKSKSPQSNHWFA

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI7019323, Length=253, Percent_Identity=35.1778656126482, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI215276969, Length=246, Percent_Identity=32.1138211382114, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI4503363, Length=229, Percent_Identity=24.8908296943231, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1788588, Length=202, Percent_Identity=29.2079207920792, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787259, Length=110, Percent_Identity=34.5454545454545, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI25146207, Length=259, Percent_Identity=33.976833976834, Blast_Score=134, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI71999402, Length=209, Percent_Identity=28.7081339712919, Blast_Score=80, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6325029, Length=256, Percent_Identity=33.203125, Blast_Score=129, Evalue=6e-31,
Organism=Drosophila melanogaster, GI24582769, Length=250, Percent_Identity=34.4, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24585265, Length=243, Percent_Identity=27.1604938271605, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 30400; Mature: 30400

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQPTPTNAQTASGQDPDLSVIIPCFNEQKRIIPTINTIIDYLNSLGRSWELIVSDDGSS
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
DQTISLVEAQRYPNLTIIKSTRNYGKGHAVRAGIIAARGNFILFTDADNATPITELDTML
CCEEEEEEHHCCCCEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCHHHHHHHH
PLLELGSYDIAIGSRAKQLLQTKQRSLGRCMMSAGLRVIVEHGLKLNIHDSQCGFKLFHR
HHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEECCHHHHHHHHH
TVAKHLAQVQTINSFAFDLELLVIADIFGYQTIEIPVDWVDIAGSKVHPIRDAYQFLRDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECEEEECCCCCCCHHHHHHHHHHHH
MSIQINHWRGRYPSSLPKTPKSKSPQSNHWFA
HHEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLQPTPTNAQTASGQDPDLSVIIPCFNEQKRIIPTINTIIDYLNSLGRSWELIVSDDGSS
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
DQTISLVEAQRYPNLTIIKSTRNYGKGHAVRAGIIAARGNFILFTDADNATPITELDTML
CCEEEEEEHHCCCCEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCHHHHHHHH
PLLELGSYDIAIGSRAKQLLQTKQRSLGRCMMSAGLRVIVEHGLKLNIHDSQCGFKLFHR
HHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEECCHHHHHHHHH
TVAKHLAQVQTINSFAFDLELLVIADIFGYQTIEIPVDWVDIAGSKVHPIRDAYQFLRDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECEEEECCCCCCCHHHHHHHHHHHH
MSIQINHWRGRYPSSLPKTPKSKSPQSNHWFA
HHEEECCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA