| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897289
Identifier: 159897289
GI number: 159897289
Start: 862854
End: 864104
Strand: Reverse
Name: 159897289
Synonym: Haur_0760
Alternate gene names: NA
Gene position: 864104-862854 (Counterclockwise)
Preceding gene: 159897290
Following gene: 159897287
Centisome position: 13.62
GC content: 49.32
Gene sequence:
>1251_bases ATGGGTGTTCTTCAACGATCCACGTTTTCAATTGCCCATCTGCCACTGCTTCAACGGCTCAAACAGGCGCTAGGATTCTG GTTAGTTGCCAGTATGCTCTTGGTCAATCTTGGTAATTATGGCTTTGCAATCGTGCTAGGGCGTGGGTTAGGGCCACAGG TCTATGCTGAAGTCAATTTAATCGTCACCTGCTTTGCACTCGCAACCTTACTCAGCAGCATGTTCCAAATCTATGCGGCT AATGCGAGTGTTCGTCCCAACAATCATGCTACGTTGCGTCGATTACGCCAAATCGCTTGGGGTATTGGGGCAGCTAGTGC AGGGGTATGCACTGGTTTAGCCGCATTTTGGCAAAGCAAGTTTCATACTAGCCCAACACCATTGCTTGTTCTAGGCCTAG GCTTAGGTAGTTATTATGCACTTGGGGTTGAACGGGGAATTATGCAAAGTCAAGCGGCGTTTGGGCGGCTCGCGCTAAAT GCCCTGCTTGAAATGCTTATTCGATTGATTGGTGCAATGATCGTGGTTAGCCTTAGCTTGGGCGTAACCGAGGCTAGTGT GGCCCTAACCAGTTCTCTATTGGGCGCATGGTGGTTTAGCCGCTCCAAACCGACAGTAACTCAGGTTGATGGAGTAAGCC ACCAAACTCCAAGCTTGTGGCCAATTGGACTATGCTTGGCTGGTCAAGGTTTATTGCTCAATAGCGATATCGTGCTGGTT ACCTTGTGGTTCTCAAGCCAGATTGCGGGGCAATACGCAGCCCTAGCATTAATTGGCCGAATTGGCTTATTTGTAAGTAG TACAGTTGCCACCCTATTTTTTGCCAAGCTGCTCCGCGCCGATCAATCGACAATTCAGCAACGTGAGGCTTTTTGGCAAA GTCTTGGAATCACCACAATCATCGGAATCGTGTTTAGCCTAGCATGTTGGGCAATGCCAGATTTGATTGTGCAAGCGCTG TTTGGCTCGGCCTATTTGCCGATTGTGAGTGTGCTTTGGCGCTATGCAGCAATTGCCAGTGGCTATGCCTTGGTCAATCT GCTGGTAAGCTATCAATTGGCCCAACAACGGCTGGCTGGGGTTTGGCTGATACTTGGGGCTGGCAGCATGCAAATAGTGG CCTTAGGCTTATTCCATCAAACCATCAACCACGTGCTTGGGGTTCAGGCAGGTATAATGCTAGCTTTATTGGTGCTCGTT GGCTTAAGCGAATGGCTATCTTGCCAAAAAAACCGCGCTGAATCGCAGTGA
Upstream 100 bases:
>100_bases CCATTGGTAGCCAGAGCTATTGGTGACTATTCACTTATTGGTTTTTAGATTTTATTTACCTATAGTTAAGCTAGCGATAT TTTTATGCGAGAACGTTATT
Downstream 100 bases:
>100_bases TCCAGCGCGGTTTTAGTTAAGCTCAGGGGCTTATTTGACGACGAGCGTGCCCTTCATCCCACCAGCATAGTGGCCAGGAT AAGCACAGATATAACTGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: Polysaccharide Transporter
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MGVLQRSTFSIAHLPLLQRLKQALGFWLVASMLLVNLGNYGFAIVLGRGLGPQVYAEVNLIVTCFALATLLSSMFQIYAA NASVRPNNHATLRRLRQIAWGIGAASAGVCTGLAAFWQSKFHTSPTPLLVLGLGLGSYYALGVERGIMQSQAAFGRLALN ALLEMLIRLIGAMIVVSLSLGVTEASVALTSSLLGAWWFSRSKPTVTQVDGVSHQTPSLWPIGLCLAGQGLLLNSDIVLV TLWFSSQIAGQYAALALIGRIGLFVSSTVATLFFAKLLRADQSTIQQREAFWQSLGITTIIGIVFSLACWAMPDLIVQAL FGSAYLPIVSVLWRYAAIASGYALVNLLVSYQLAQQRLAGVWLILGAGSMQIVALGLFHQTINHVLGVQAGIMLALLVLV GLSEWLSCQKNRAESQ
Sequences:
>Translated_416_residues MGVLQRSTFSIAHLPLLQRLKQALGFWLVASMLLVNLGNYGFAIVLGRGLGPQVYAEVNLIVTCFALATLLSSMFQIYAA NASVRPNNHATLRRLRQIAWGIGAASAGVCTGLAAFWQSKFHTSPTPLLVLGLGLGSYYALGVERGIMQSQAAFGRLALN ALLEMLIRLIGAMIVVSLSLGVTEASVALTSSLLGAWWFSRSKPTVTQVDGVSHQTPSLWPIGLCLAGQGLLLNSDIVLV TLWFSSQIAGQYAALALIGRIGLFVSSTVATLFFAKLLRADQSTIQQREAFWQSLGITTIIGIVFSLACWAMPDLIVQAL FGSAYLPIVSVLWRYAAIASGYALVNLLVSYQLAQQRLAGVWLILGAGSMQIVALGLFHQTINHVLGVQAGIMLALLVLV GLSEWLSCQKNRAESQ >Mature_415_residues GVLQRSTFSIAHLPLLQRLKQALGFWLVASMLLVNLGNYGFAIVLGRGLGPQVYAEVNLIVTCFALATLLSSMFQIYAAN ASVRPNNHATLRRLRQIAWGIGAASAGVCTGLAAFWQSKFHTSPTPLLVLGLGLGSYYALGVERGIMQSQAAFGRLALNA LLEMLIRLIGAMIVVSLSLGVTEASVALTSSLLGAWWFSRSKPTVTQVDGVSHQTPSLWPIGLCLAGQGLLLNSDIVLVT LWFSSQIAGQYAALALIGRIGLFVSSTVATLFFAKLLRADQSTIQQREAFWQSLGITTIIGIVFSLACWAMPDLIVQALF GSAYLPIVSVLWRYAAIASGYALVNLLVSYQLAQQRLAGVWLILGAGSMQIVALGLFHQTINHVLGVQAGIMLALLVLVG LSEWLSCQKNRAESQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44603; Mature: 44472
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVLQRSTFSIAHLPLLQRLKQALGFWLVASMLLVNLGNYGFAIVLGRGLGPQVYAEVNL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH IVTCFALATLLSSMFQIYAANASVRPNNHATLRRLRQIAWGIGAASAGVCTGLAAFWQSK HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH FHTSPTPLLVLGLGLGSYYALGVERGIMQSQAAFGRLALNALLEMLIRLIGAMIVVSLSL CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVTEASVALTSSLLGAWWFSRSKPTVTQVDGVSHQTPSLWPIGLCLAGQGLLLNSDIVLV CCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCEEEECCEEEE TLWFSSQIAGQYAALALIGRIGLFVSSTVATLFFAKLLRADQSTIQQREAFWQSLGITTI EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGIVFSLACWAMPDLIVQALFGSAYLPIVSVLWRYAAIASGYALVNLLVSYQLAQQRLAG HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VWLILGAGSMQIVALGLFHQTINHVLGVQAGIMLALLVLVGLSEWLSCQKNRAESQ EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GVLQRSTFSIAHLPLLQRLKQALGFWLVASMLLVNLGNYGFAIVLGRGLGPQVYAEVNL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH IVTCFALATLLSSMFQIYAANASVRPNNHATLRRLRQIAWGIGAASAGVCTGLAAFWQSK HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH FHTSPTPLLVLGLGLGSYYALGVERGIMQSQAAFGRLALNALLEMLIRLIGAMIVVSLSL CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVTEASVALTSSLLGAWWFSRSKPTVTQVDGVSHQTPSLWPIGLCLAGQGLLLNSDIVLV CCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCEEEECCEEEE TLWFSSQIAGQYAALALIGRIGLFVSSTVATLFFAKLLRADQSTIQQREAFWQSLGITTI EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGIVFSLACWAMPDLIVQALFGSAYLPIVSVLWRYAAIASGYALVNLLVSYQLAQQRLAG HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VWLILGAGSMQIVALGLFHQTINHVLGVQAGIMLALLVLVGLSEWLSCQKNRAESQ EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA