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The map label for this gene is nifU [H]

Identifier: 159896940

GI number: 159896940

Start: 478797

End: 479192

Strand: Reverse

Name: nifU [H]

Synonym: Haur_0408

Alternate gene names: 159896940

Gene position: 479192-478797 (Counterclockwise)

Preceding gene: 159896941

Following gene: 159896939

Centisome position: 7.55

GC content: 47.22

Gene sequence:

>396_bases
GTGGACGATTTATATCGTGAAAATATATTAGATCATTATCGCCATCCGCGAAATTACGGCGAGATCGAACAAGCAACGAT
TGTGCAACACGAGCATAACCCGTTGTGCGGCGATCAACTCAGCATTTATTTGCTAGTCGAGAACGAGCGGATTGTTGATG
TAAAATTTAAAGGCAAAGGCTGCGCGATCAGCCAAGCTTCAGCCTCGATGCTCAGCGAAGAACTTGCTGGCAAAAGCGTT
GATGAAGCCAAAGCCTTTGATAAACAAACCATCCTCGATTTATTGGGGATACCGATTGGACCCGTGCGGCTCAAGTGTGC
CTTGCTCTCGCTCAAAACACTCAAAGCTGGACTCTACGGGGTCAATCTGGTTGACGACGATGAGGATAGCCTTTGA

Upstream 100 bases:

>100_bases
GGTACGCGCATCATTCTACCTATACACGCTTGAGGAAGAAATTGATCGTTTGGCCGAAGCCTTGGTTTTGGCTCGCGATA
CCTTCCAACTGTGAGGCCTT

Downstream 100 bases:

>100_bases
GCCATCTTGCTCCGCACTCAGCATTAATTACCATCGTTCGCTTTGGTAGATTGGCTGGAGTAGCACTTGTTCTATGGGTA
ATCTATGCACTGATAGAACG

Product: NifU family SUF system FeS assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MDDLYRENILDHYRHPRNYGEIEQATIVQHEHNPLCGDQLSIYLLVENERIVDVKFKGKGCAISQASASMLSEELAGKSV
DEAKAFDKQTILDLLGIPIGPVRLKCALLSLKTLKAGLYGVNLVDDDEDSL

Sequences:

>Translated_131_residues
MDDLYRENILDHYRHPRNYGEIEQATIVQHEHNPLCGDQLSIYLLVENERIVDVKFKGKGCAISQASASMLSEELAGKSV
DEAKAFDKQTILDLLGIPIGPVRLKCALLSLKTLKAGLYGVNLVDDDEDSL
>Mature_131_residues
MDDLYRENILDHYRHPRNYGEIEQATIVQHEHNPLCGDQLSIYLLVENERIVDVKFKGKGCAISQASASMLSEELAGKSV
DEAKAFDKQTILDLLGIPIGPVRLKCALLSLKTLKAGLYGVNLVDDDEDSL

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=119, Percent_Identity=35.2941176470588, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI24307953, Length=115, Percent_Identity=34.7826086956522, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788878, Length=123, Percent_Identity=34.1463414634146, Blast_Score=78, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17543474, Length=121, Percent_Identity=33.8842975206612, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=34.1463414634146, Blast_Score=68, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6325122, Length=120, Percent_Identity=32.5, Blast_Score=67, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355597, Length=119, Percent_Identity=38.655462184874, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14570; Mature: 14570

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLYRENILDHYRHPRNYGEIEQATIVQHEHNPLCGDQLSIYLLVENERIVDVKFKGKG
CCHHHHHHHHHHHCCCCCCCCCCHHEEEECCCCCCCCCCEEEEEEECCCEEEEEEECCCC
CAISQASASMLSEELAGKSVDEAKAFDKQTILDLLGIPIGPVRLKCALLSLKTLKAGLYG
CEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEE
VNLVDDDEDSL
CEEECCCCCCC
>Mature Secondary Structure
MDDLYRENILDHYRHPRNYGEIEQATIVQHEHNPLCGDQLSIYLLVENERIVDVKFKGKG
CCHHHHHHHHHHHCCCCCCCCCCHHEEEECCCCCCCCCCEEEEEEECCCEEEEEEECCCC
CAISQASASMLSEELAGKSVDEAKAFDKQTILDLLGIPIGPVRLKCALLSLKTLKAGLYG
CEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEE
VNLVDDDEDSL
CEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]