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The map label for this gene is sufB [H]

Identifier: 159896939

GI number: 159896939

Start: 477128

End: 478546

Strand: Reverse

Name: sufB [H]

Synonym: Haur_0407

Alternate gene names: 159896939

Gene position: 478546-477128 (Counterclockwise)

Preceding gene: 159896940

Following gene: 159896938

Centisome position: 7.54

GC content: 49.68

Gene sequence:

>1419_bases
ATGTCCAACCCTGCACAAAACGAGATCGAGTTTGATTACTCGAAGTACGGCTTTCGCGACGAAGAGAACTACACATTCAA
ATCTTCAAAAGGTCTGAATGCCGATATTGTACGCACGATCTCGGAAATGAAGGGCGAACCTGAATGGATGTTGCAACGCC
GCTTGAAGGCGCTGGAAATTTTCCACAAGAAGCCATTGCCTGTTAGTGGAGTCTGGGCCAATCCTCGCTTAGCTGAGCTG
GATTTCCAAGATATTCACTATTATGTGCGACCTGGCGAACGCGCCGAAAATAACTGGGACGATGTGCCAGAAAGTATCAA
GAATACCTTTGAAAAATTGGGTATTCCTGAAGCCGAACGCAAGTTCTTGGCTGGCGTTGGCGCTCAATACGAATCAGAAG
TTGTTTACCACTCGTTGCGCGAAGAGTGGGAAAAACTGGGCGTGATCTTTCTTGATACCGATACTGGTTTGAAAGAGTAT
CCAGAATTGTTCAAGGAATATTTCGGCACGATCATTCCTTCAGCCGATAACAAATTTGCTGCCTTGAACACAGCAGTTTG
GTCGGGTGGCTCGTTCGTGTATGTACCCAAGGGTGTCAAGGTCGATATTCCATTGCAAGCCTATTTCCGCATCAACGCTG
AAAACATGGGCCAGTTCGAACGCACCTTGATTATCGTTGACGAAGGCGCTGAAGTTCACTATATCGAAGGTTGTACCGCG
CCAGTCTACAGCACTAACTCACTGCACTCAGCGGTTGTGGAAATCATCATCAAAAAAGGTGGCAAATGCCGCTACACCAC
GATTCAAAACTGGGCCAATAATATCTTTAATTTGGTGACCAAACGCGCCGTAGCCTACGAAGATGCTTCAATGGAATGGG
TCGATGGCAACATTGGCTCGAAGTTGACCATGAAGTATCCTGCGGTCTACATGATGGGTCGCGGCGCAAAGGGCGAGGTG
CTCTCAGTCGCTTATGCTGGCGAAGGCCAACATCAAGACGCTGGGGCCAAGATGGTGCACGGCGCTCCCGACACCACCAG
CCGCATCACCAACAAATCAGTCTCAAAGAACGGCGGTCGCACGACCTATCGTGGTTTGGCCAAGGTTATGCGCGGTGCAC
ACAATGCCAAAATCAACGTGGTCTGTGATGCCTTGATTCTCGACAATCGCTCAGCCTCGGATACGATTCCTTATATCGAG
ATCGAGGAAGATTCAGCAACCGTCGCCCACGAAGCAACCGTCGGCAAAATCGGCGAAGAGCAATTGTTCTATCTGATGAG
CCGTGGCCTCGACGAAGCCGAAGCACTTTCGATGATTGTGCTGGGCTTTATGGAGCCATTCACCCGCGAATTGCCCATGG
AATATGCGGTCGAATTGAACCGCTTGATCCAAATGGAAATGGAAGGTTCGGTCGGCTAG

Upstream 100 bases:

>100_bases
TTTCTGCTAATGAATGGCAGCATTTAGAAACAGAATTGCAAGATTCTGAATCAAGTAATCTCATCACTTATTCGTGATCA
CACTATAGGAGGCTCAGGGC

Downstream 100 bases:

>100_bases
GCTTGGCCTACCAACGCCGAGGCGCAACCACTGCGTCCTCGGCGTTTTCTATGTCAGATCATTGTTAATCAATTTAGTTA
ATAAATTAAGGAATAATGAT

Product: FeS assembly protein SufB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MSNPAQNEIEFDYSKYGFRDEENYTFKSSKGLNADIVRTISEMKGEPEWMLQRRLKALEIFHKKPLPVSGVWANPRLAEL
DFQDIHYYVRPGERAENNWDDVPESIKNTFEKLGIPEAERKFLAGVGAQYESEVVYHSLREEWEKLGVIFLDTDTGLKEY
PELFKEYFGTIIPSADNKFAALNTAVWSGGSFVYVPKGVKVDIPLQAYFRINAENMGQFERTLIIVDEGAEVHYIEGCTA
PVYSTNSLHSAVVEIIIKKGGKCRYTTIQNWANNIFNLVTKRAVAYEDASMEWVDGNIGSKLTMKYPAVYMMGRGAKGEV
LSVAYAGEGQHQDAGAKMVHGAPDTTSRITNKSVSKNGGRTTYRGLAKVMRGAHNAKINVVCDALILDNRSASDTIPYIE
IEEDSATVAHEATVGKIGEEQLFYLMSRGLDEAEALSMIVLGFMEPFTRELPMEYAVELNRLIQMEMEGSVG

Sequences:

>Translated_472_residues
MSNPAQNEIEFDYSKYGFRDEENYTFKSSKGLNADIVRTISEMKGEPEWMLQRRLKALEIFHKKPLPVSGVWANPRLAEL
DFQDIHYYVRPGERAENNWDDVPESIKNTFEKLGIPEAERKFLAGVGAQYESEVVYHSLREEWEKLGVIFLDTDTGLKEY
PELFKEYFGTIIPSADNKFAALNTAVWSGGSFVYVPKGVKVDIPLQAYFRINAENMGQFERTLIIVDEGAEVHYIEGCTA
PVYSTNSLHSAVVEIIIKKGGKCRYTTIQNWANNIFNLVTKRAVAYEDASMEWVDGNIGSKLTMKYPAVYMMGRGAKGEV
LSVAYAGEGQHQDAGAKMVHGAPDTTSRITNKSVSKNGGRTTYRGLAKVMRGAHNAKINVVCDALILDNRSASDTIPYIE
IEEDSATVAHEATVGKIGEEQLFYLMSRGLDEAEALSMIVLGFMEPFTRELPMEYAVELNRLIQMEMEGSVG
>Mature_471_residues
SNPAQNEIEFDYSKYGFRDEENYTFKSSKGLNADIVRTISEMKGEPEWMLQRRLKALEIFHKKPLPVSGVWANPRLAELD
FQDIHYYVRPGERAENNWDDVPESIKNTFEKLGIPEAERKFLAGVGAQYESEVVYHSLREEWEKLGVIFLDTDTGLKEYP
ELFKEYFGTIIPSADNKFAALNTAVWSGGSFVYVPKGVKVDIPLQAYFRINAENMGQFERTLIIVDEGAEVHYIEGCTAP
VYSTNSLHSAVVEIIIKKGGKCRYTTIQNWANNIFNLVTKRAVAYEDASMEWVDGNIGSKLTMKYPAVYMMGRGAKGEVL
SVAYAGEGQHQDAGAKMVHGAPDTTSRITNKSVSKNGGRTTYRGLAKVMRGAHNAKINVVCDALILDNRSASDTIPYIEI
EEDSATVAHEATVGKIGEEQLFYLMSRGLDEAEALSMIVLGFMEPFTRELPMEYAVELNRLIQMEMEGSVG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=468, Percent_Identity=41.6666666666667, Blast_Score=365, Evalue=1e-102,
Organism=Escherichia coli, GI1787971, Length=154, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 52912; Mature: 52780

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPAQNEIEFDYSKYGFRDEENYTFKSSKGLNADIVRTISEMKGEPEWMLQRRLKALEI
CCCCCCCCEEECHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
FHKKPLPVSGVWANPRLAELDFQDIHYYVRPGERAENNWDDVPESIKNTFEKLGIPEAER
HHCCCCCCCCCCCCCCEEECCHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
KFLAGVGAQYESEVVYHSLREEWEKLGVIFLDTDTGLKEYPELFKEYFGTIIPSADNKFA
HHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEE
ALNTAVWSGGSFVYVPKGVKVDIPLQAYFRINAENMGQFERTLIIVDEGAEVHYIEGCTA
EEEHEEECCCCEEEECCCCEEECCEEEEEEECCHHCCCEEEEEEEEECCCCEEEECCCCC
PVYSTNSLHSAVVEIIIKKGGKCRYTTIQNWANNIFNLVTKRAVAYEDASMEWVDGNIGS
CCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCC
KLTMKYPAVYMMGRGAKGEVLSVAYAGEGQHQDAGAKMVHGAPDTTSRITNKSVSKNGGR
EEEEECCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCC
TTYRGLAKVMRGAHNAKINVVCDALILDNRSASDTIPYIEIEEDSATVAHEATVGKIGEE
HHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECCCCCEEEHHHHHCCCCHH
QLFYLMSRGLDEAEALSMIVLGFMEPFTRELPMEYAVELNRLIQMEMEGSVG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEECCCCC
>Mature Secondary Structure 
SNPAQNEIEFDYSKYGFRDEENYTFKSSKGLNADIVRTISEMKGEPEWMLQRRLKALEI
CCCCCCCEEECHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
FHKKPLPVSGVWANPRLAELDFQDIHYYVRPGERAENNWDDVPESIKNTFEKLGIPEAER
HHCCCCCCCCCCCCCCEEECCHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
KFLAGVGAQYESEVVYHSLREEWEKLGVIFLDTDTGLKEYPELFKEYFGTIIPSADNKFA
HHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEE
ALNTAVWSGGSFVYVPKGVKVDIPLQAYFRINAENMGQFERTLIIVDEGAEVHYIEGCTA
EEEHEEECCCCEEEECCCCEEECCEEEEEEECCHHCCCEEEEEEEEECCCCEEEECCCCC
PVYSTNSLHSAVVEIIIKKGGKCRYTTIQNWANNIFNLVTKRAVAYEDASMEWVDGNIGS
CCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCC
KLTMKYPAVYMMGRGAKGEVLSVAYAGEGQHQDAGAKMVHGAPDTTSRITNKSVSKNGGR
EEEEECCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCC
TTYRGLAKVMRGAHNAKINVVCDALILDNRSASDTIPYIEIEEDSATVAHEATVGKIGEE
HHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECCCCCEEEHHHHHCCCCHH
QLFYLMSRGLDEAEALSMIVLGFMEPFTRELPMEYAVELNRLIQMEMEGSVG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]