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The map label for this gene is ybjS [H]

Identifier: 159896908

GI number: 159896908

Start: 449487

End: 450467

Strand: Reverse

Name: ybjS [H]

Synonym: Haur_0376

Alternate gene names: 159896908

Gene position: 450467-449487 (Counterclockwise)

Preceding gene: 159896909

Following gene: 159896907

Centisome position: 7.1

GC content: 53.72

Gene sequence:

>981_bases
ATGCAAATCTTAGTCACAGGCGCTACTGGTTTTTTGGGTGCGCACACCGCGTTGGCTCTGCAAAAAGCTGGGCATACGGT
GCTGGGTTTGGGCCGCCGCTGGGAGCATGTTCCACAACTACTAGCCGCTGGCATTCAGCCAATCAAGGCCGATCTGCGCG
ATCGCGCTACGTTGATTGCGGCCTGTGCTAGTTGCGATGTGGTAGTGCATAGCGCGGCACTTTCGGCTCCTTGGGGCAGT
CGCAGCGATTTTCAAACCATTAACGTTGATGGTACAGCCAATGTACTAGCTGGTTGTGCTGCACAGAAGGTCGGACGCTT
GGTGTTTATTTCATCACCAAGCGTTCTTTCCAATGGCCGCGATCAGTTTGATTTGCTCGATACAATGCCCTATCCAGCGC
GGCCTATTTCGCTGTATTCGGCCAGCAAACAGCAAGCAGAACAATTGGTGCTCAAGCATTCCACGCCCAGCGTGATTTTG
CGGCCTAAGGCAATTTTTGGCGAGGGCGACCAAGCCTTGTTGCCACGAATTATCGCCGCAGCCCGCGCTGGCCGCTTACG
TCAATTTGGCAACGGACAAAATTTGGTTGATTTGACCTATGTTGCCAATGTAGTGCATGCAATTGAGTTGGCGTTAACGG
CTCCAGCAGCGCTTGGCAAGTGTTATACAATCACCAATGGCGAACATCCCCAGCTCTGGGCGGTGATTCGGCGGGTACTG
GCTGAGTTGGGTTTGCCTAGCCAGTTGCGGCCAATGCCCTTGTCGCTAGCCTTAGCCGTGGCACGAATCATGGAAAGTAT
CAGCTTGCTAACACGGCGTGAGCCATTACTAACGCGTTATAGCGTCTTGGCGCTGGCCCGCAGCCAAACTCACTCCTTGG
TTGCAGCCCAACACGATTTGGGTTATCAGCCATTGATCAGCCTTGAAACGGGGATTCAACGCACCATCGCCGCGCTTAAA
CAACCAACCAAGGGGGTTTAA

Upstream 100 bases:

>100_bases
GATTCATTTGGCGGCGCTTGACGAGCGATTGAACGAGCAAGGCTATATCGTGCCAGGCTTGGGCGATGCTGGCGACCGCC
AATTTGGAACGTAGGCTAGA

Downstream 100 bases:

>100_bases
CTAATGCAAGTCAGATTGCTGGATACTGGAATTTGCCGCGTGCCCGAATTTCATGTGCTACGCGATGGCAGTCGCCGCAT
GCTCGATTGCCATGCGCTTG

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MQILVTGATGFLGAHTALALQKAGHTVLGLGRRWEHVPQLLAAGIQPIKADLRDRATLIAACASCDVVVHSAALSAPWGS
RSDFQTINVDGTANVLAGCAAQKVGRLVFISSPSVLSNGRDQFDLLDTMPYPARPISLYSASKQQAEQLVLKHSTPSVIL
RPKAIFGEGDQALLPRIIAAARAGRLRQFGNGQNLVDLTYVANVVHAIELALTAPAALGKCYTITNGEHPQLWAVIRRVL
AELGLPSQLRPMPLSLALAVARIMESISLLTRREPLLTRYSVLALARSQTHSLVAAQHDLGYQPLISLETGIQRTIAALK
QPTKGV

Sequences:

>Translated_326_residues
MQILVTGATGFLGAHTALALQKAGHTVLGLGRRWEHVPQLLAAGIQPIKADLRDRATLIAACASCDVVVHSAALSAPWGS
RSDFQTINVDGTANVLAGCAAQKVGRLVFISSPSVLSNGRDQFDLLDTMPYPARPISLYSASKQQAEQLVLKHSTPSVIL
RPKAIFGEGDQALLPRIIAAARAGRLRQFGNGQNLVDLTYVANVVHAIELALTAPAALGKCYTITNGEHPQLWAVIRRVL
AELGLPSQLRPMPLSLALAVARIMESISLLTRREPLLTRYSVLALARSQTHSLVAAQHDLGYQPLISLETGIQRTIAALK
QPTKGV
>Mature_326_residues
MQILVTGATGFLGAHTALALQKAGHTVLGLGRRWEHVPQLLAAGIQPIKADLRDRATLIAACASCDVVVHSAALSAPWGS
RSDFQTINVDGTANVLAGCAAQKVGRLVFISSPSVLSNGRDQFDLLDTMPYPARPISLYSASKQQAEQLVLKHSTPSVIL
RPKAIFGEGDQALLPRIIAAARAGRLRQFGNGQNLVDLTYVANVVHAIELALTAPAALGKCYTITNGEHPQLWAVIRRVL
AELGLPSQLRPMPLSLALAVARIMESISLLTRREPLLTRYSVLALARSQTHSLVAAQHDLGYQPLISLETGIQRTIAALK
QPTKGV

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=333, Percent_Identity=30.6306306306306, Blast_Score=141, Evalue=8e-34,
Organism=Homo sapiens, GI8393516, Length=333, Percent_Identity=30.6306306306306, Blast_Score=141, Evalue=8e-34,
Organism=Homo sapiens, GI239745448, Length=338, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI310132178, Length=338, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI310113012, Length=338, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI116268111, Length=332, Percent_Identity=29.5180722891566, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI4504507, Length=354, Percent_Identity=28.2485875706215, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI260763931, Length=354, Percent_Identity=27.683615819209, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI4504509, Length=354, Percent_Identity=27.683615819209, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI19923621, Length=355, Percent_Identity=29.2957746478873, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI87081792, Length=341, Percent_Identity=32.258064516129, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1786974, Length=242, Percent_Identity=28.9256198347107, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17570557, Length=341, Percent_Identity=29.3255131964809, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17509709, Length=282, Percent_Identity=25.177304964539, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321437, Length=343, Percent_Identity=30.9037900874636, Blast_Score=139, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 34834; Mature: 34834

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQILVTGATGFLGAHTALALQKAGHTVLGLGRRWEHVPQLLAAGIQPIKADLRDRATLIA
CEEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ACASCDVVVHSAALSAPWGSRSDFQTINVDGTANVLAGCAAQKVGRLVFISSPSVLSNGR
HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHCCC
DQFDLLDTMPYPARPISLYSASKQQAEQLVLKHSTPSVILRPKAIFGEGDQALLPRIIAA
CCHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCEEEECHHHCCCCCHHHHHHHHHH
ARAGRLRQFGNGQNLVDLTYVANVVHAIELALTAPAALGKCYTITNGEHPQLWAVIRRVL
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCHHHHHHHHHHH
AELGLPSQLRPMPLSLALAVARIMESISLLTRREPLLTRYSVLALARSQTHSLVAAQHDL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
GYQPLISLETGIQRTIAALKQPTKGV
CCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQILVTGATGFLGAHTALALQKAGHTVLGLGRRWEHVPQLLAAGIQPIKADLRDRATLIA
CEEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ACASCDVVVHSAALSAPWGSRSDFQTINVDGTANVLAGCAAQKVGRLVFISSPSVLSNGR
HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHCCC
DQFDLLDTMPYPARPISLYSASKQQAEQLVLKHSTPSVILRPKAIFGEGDQALLPRIIAA
CCHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCEEEECHHHCCCCCHHHHHHHHHH
ARAGRLRQFGNGQNLVDLTYVANVVHAIELALTAPAALGKCYTITNGEHPQLWAVIRRVL
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCHHHHHHHHHHH
AELGLPSQLRPMPLSLALAVARIMESISLLTRREPLLTRYSVLALARSQTHSLVAAQHDL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
GYQPLISLETGIQRTIAALKQPTKGV
CCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]