Click here to switch to the map view.

The map label for this gene is rpl24e

Identifier: 159040897

GI number: 159040897

Start: 349649

End: 349861

Strand: Reverse

Name: rpl24e

Synonym: Cmaq_0311

Alternate gene names: 159040897

Gene position: 349861-349649 (Counterclockwise)

Preceding gene: 159040899

Following gene: 159040896

Centisome position: 16.84

GC content: 48.36

Gene sequence:

>213_bases
GTGAGGATTTACAATTGCTCATACTGCGGGAGACCAATACCGCCTGGCTATGGGATAATGTACGTTAGGGTTGATGGGGT
TGTCCTACGGTTCTGCAGTAGGAGGTGTTTCGTAAGCATGGTTAAAATGGGTAAGAACCCGCAGAAGCAGGCCTGGGTTA
GGAAAATAAGGCGTGCTAAATCCGCGGCTCAGTCAAAATCCTCAAGCAAGTAA

Upstream 100 bases:

>100_bases
GGCCTTAATCAGCATCACTGCATGATACTTATTCACGTTAATGCCAGTAATTACATAATCAATGCGTCAAATTTAAAAGA
ATAGGGAATTAAGGGGGATT

Downstream 100 bases:

>100_bases
GGTAAGGTAATTAGTATTATTAACCAACCCATGGATCCATTAACTCATTTTAACCTGTAATGAGGCATTAATGCTTGGTA
TTAATGCTTTAGTAAACAAT

Product: 50S ribosomal protein L24E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MRIYNCSYCGRPIPPGYGIMYVRVDGVVLRFCSRRCFVSMVKMGKNPQKQAWVRKIRRAKSAAQSKSSSK

Sequences:

>Translated_70_residues
MRIYNCSYCGRPIPPGYGIMYVRVDGVVLRFCSRRCFVSMVKMGKNPQKQAWVRKIRRAKSAAQSKSSSK
>Mature_70_residues
MRIYNCSYCGRPIPPGYGIMYVRVDGVVLRFCSRRCFVSMVKMGKNPQKQAWVRKIRRAKSAAQSKSSSK

Specific function: Binds to the 23S rRNA

COG id: COG2075

COG function: function code J; Ribosomal protein L24E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L24e family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323037, Length=59, Percent_Identity=44.0677966101695, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL24E_CALMQ (A8MB69)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001540149.1
- ProteinModelPortal:   A8MB69
- SMR:   A8MB69
- GeneID:   5710185
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_0311
- HOGENOM:   HBG499845
- OMA:   RIVYCAF
- BioCyc:   CMAQ397948:CMAQ_0311-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00773
- InterPro:   IPR000988
- InterPro:   IPR011017
- Gene3D:   G3DSA:2.30.170.20
- PANTHER:   PTHR10792
- SMART:   SM00746

Pfam domain/function: PF01246 Ribosomal_L24e

EC number: NA

Molecular weight: Translated: 8034; Mature: 8034

Theoretical pI: Translated: 11.39; Mature: 11.39

Prosite motif: PS01073 RIBOSOMAL_L24E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
11.4 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
11.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIYNCSYCGRPIPPGYGIMYVRVDGVVLRFCSRRCFVSMVKMGKNPQKQAWVRKIRRAK
CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SAAQSKSSSK
HHHHCCCCCC
>Mature Secondary Structure
MRIYNCSYCGRPIPPGYGIMYVRVDGVVLRFCSRRCFVSMVKMGKNPQKQAWVRKIRRAK
CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SAAQSKSSSK
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA