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The map label for this gene is 159040790

Identifier: 159040790

GI number: 159040790

Start: 240150

End: 240500

Strand: Reverse

Name: 159040790

Synonym: Cmaq_0203

Alternate gene names: NA

Gene position: 240500-240150 (Counterclockwise)

Preceding gene: 159040792

Following gene: 159040789

Centisome position: 11.58

GC content: 44.16

Gene sequence:

>351_bases
ATGAGTTACTACGACGATGAGGATAATATTCAAGATGAGGATGAGCTTGAGGAGGCTAGGAGAAGAAGGCTTGAGGAGCT
TCAGCGTAAGGCTGAGGAAGAGGAGAGGAAGAGGGCTGAGGAGGCTCAGAGGAGGGCTGTTATAAGGGTTATATTAACCC
CAGAGGCTAGGAGTAGGCTTGATAACCTTAGGCTTATTAAACCTGAGTTAGTTGAATCAATTGAGAATCAGTTAATTGCC
CTAGCTCAGTCAGGTAGAATTAAGGTTCCTATAACAGACGAAGAACTTAAAAAGATACTGGAAACGGTCTATAGCCAAAC
CAGGAGGGAGTATAGGATAAGGTTCAGGTGA

Upstream 100 bases:

>100_bases
TGGGTAATAATCATTGATTAATCGCCTCATGACCATGATGCTTACTTCATGAAGGCGACCGGCATTAGGTTTTTAAAGCC
AATGCGCAACTTAGTGATGT

Downstream 100 bases:

>100_bases
GTAATATGGCTACCCATAAGCCATTGGGCTTCAAGCTCAGGCTGGCGTCAGCAGGGAAGTCTAATAGGAATCCACCAGCC
TGGGTCATGGTTAAAACAGA

Product: DNA-binding TFAR19-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSYYDDEDNIQDEDELEEARRRRLEELQRKAEEEERKRAEEAQRRAVIRVILTPEARSRLDNLRLIKPELVESIENQLIA
LAQSGRIKVPITDEELKKILETVYSQTRREYRIRFR

Sequences:

>Translated_116_residues
MSYYDDEDNIQDEDELEEARRRRLEELQRKAEEEERKRAEEAQRRAVIRVILTPEARSRLDNLRLIKPELVESIENQLIA
LAQSGRIKVPITDEELKKILETVYSQTRREYRIRFR
>Mature_115_residues
SYYDDEDNIQDEDELEEARRRRLEELQRKAEEEERKRAEEAQRRAVIRVILTPEARSRLDNLRLIKPELVESIENQLIAL
AQSGRIKVPITDEELKKILETVYSQTRREYRIRFR

Specific function: Unknown

COG id: COG2118

COG function: function code R; DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PDCD5 family [H]

Homologues:

Organism=Homo sapiens, GI4759224, Length=109, Percent_Identity=36.697247706422, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022889
- InterPro:   IPR002836 [H]

Pfam domain/function: PF01984 dsDNA_bind [H]

EC number: NA

Molecular weight: Translated: 14056; Mature: 13925

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYYDDEDNIQDEDELEEARRRRLEELQRKAEEEERKRAEEAQRRAVIRVILTPEARSRL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHH
DNLRLIKPELVESIENQLIALAQSGRIKVPITDEELKKILETVYSQTRREYRIRFR
HHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SYYDDEDNIQDEDELEEARRRRLEELQRKAEEEERKRAEEAQRRAVIRVILTPEARSRL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHH
DNLRLIKPELVESIENQLIALAQSGRIKVPITDEELKKILETVYSQTRREYRIRFR
HHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA