| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159040792
Identifier: 159040792
GI number: 159040792
Start: 242132
End: 243634
Strand: Reverse
Name: 159040792
Synonym: Cmaq_0205
Alternate gene names: NA
Gene position: 243634-242132 (Counterclockwise)
Preceding gene: 159040794
Following gene: 159040790
Centisome position: 11.73
GC content: 44.58
Gene sequence:
>1503_bases GTGAGCGATAAGGGTTTGTTTGTTAGGGGTTCTACTGGTTTGGTTAGGGAGGCTGGTTTTGTTGATGCTGTTAGTGTTAA TGTTGCTAATATGTCTGTTGGTGCTGCTTTGGGTACTGTTGGTTTTACACTAGCCTCCTTACCCTCAGTGTCTGGTGTTA ACCTAGTTGCAGCATCAATAATAGCCTTCACACTATCAATACCACAAATAATAACATACACAACACTAACAAAACACATA CCAAGAACAGGAGGAGACTACGTATGGGTTAGTAGGCTACTTGGCCCAAGGTTCACGTGGCTTGTAGTAGGCCTTGTCGT AGGCTTCATAATAGAGTCACTGGCCTACTATGCCTTAATAGCCATAGCTGGGGTGGGGCAGTTGGGTACAATGTTATCAA CCCTAGGCATTAACATCAGCTTCACCCCCCTTGAGGTTATTGGAATCGGCATCCTTTACTTCGCCATAGTAGTCTTCGTG AACATAATGGGTACTAAGTATGGTATTAGGTTAATGACTGTGTTAACCATTGCATCAATAGTCACACTCTTCTTAGCCTT AGCGGTACTATACGTAGTACCTAAATCAGTGGTTATAAGTCGAGTCAGCTCACTCTTACCAAGTGGTGTAACGTATAGTA AGGTTGCTTCACAGTACACTGGCCCATACTTCGCACTAGGCCCAACAATAATGATGCTACCCTTCTTCGCAATATACATA TACCCATGGCTTCAGGCAGCACCTGCAATAGCATCGGAGATAAAGAGTAGGCGCGCCATTAACTGGAATCTACCGACATC AGCAGTCTTATCAATGATCATGGTGACCCTCGGCTTCGCAGCAATGTATTACTCAATGGGGTTTAGGTTCTCCACAATGG CTATGGCTAATGGTTACGTTAACTTCTGGTCAGCGGCAATGGTTGCCTCAGGTAATGTGGTGTTGGCTTGGATAATAGGG ATTGGGTCAGTGTTATGGTACTTGGCGGTGTTAGCCTATGGAGCCATAGTGATCGTACGCTACTTATTCGCATTATCCTT TGATAGGATACTACCGGAGTTCTTCTCATACGTAAGTCCACGTCTAAGGAGCCCAGTCTATGCGCATTTATTCGACTTAG TCATAACAGCAGCATTAATAGCCTCAGCTGAAGCATTATACAGCACCTTCTCAAGCCTATACGGTGCAGTGGTGGAGGCA TTAATATACTTCGCCCTAGTCGGCGTAGCCGCGGCGGTTGCGGCTATTCTTAATAAGGTTAAGTTAAGTAGAGGTGTTAG GGTAACCTTAGCCGTGGCAAGTATACTGATGGTTGGGGTTATGGGTTACATATCTTATCAATTCCTAGAGTACCCAAGCA TCTGGGGTGGTAATCCATTAGCATACGGTGTTGAAATAGGAGCTGTGTTGGTGGGGATAGCTATATACTTCATAGCAAGG CACATTAACTTAAGAAGGGGACTAGATATATCACTGGTGTTCATGGAAATACCGCCTGAATAA
Upstream 100 bases:
>100_bases GTATTTAACAATTAGTTTAACATATAAATTTAATTAAGTAATTAAAGGAATCATTTAATTAAGGGAAATGGTTTATAAAT TGGTTTAATTAAGGAGTTGC
Downstream 100 bases:
>100_bases TACTTTATGTGAAAATAATTTAAATAAACCTTTATTGTTTAAGCCAACTGATTAAATCCATCCTCTTAGTTTCATTGCCT TCTCCACTCTCTCTATGGCT
Product: amino acid transporter
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MSDKGLFVRGSTGLVREAGFVDAVSVNVANMSVGAALGTVGFTLASLPSVSGVNLVAASIIAFTLSIPQIITYTTLTKHI PRTGGDYVWVSRLLGPRFTWLVVGLVVGFIIESLAYYALIAIAGVGQLGTMLSTLGINISFTPLEVIGIGILYFAIVVFV NIMGTKYGIRLMTVLTIASIVTLFLALAVLYVVPKSVVISRVSSLLPSGVTYSKVASQYTGPYFALGPTIMMLPFFAIYI YPWLQAAPAIASEIKSRRAINWNLPTSAVLSMIMVTLGFAAMYYSMGFRFSTMAMANGYVNFWSAAMVASGNVVLAWIIG IGSVLWYLAVLAYGAIVIVRYLFALSFDRILPEFFSYVSPRLRSPVYAHLFDLVITAALIASAEALYSTFSSLYGAVVEA LIYFALVGVAAAVAAILNKVKLSRGVRVTLAVASILMVGVMGYISYQFLEYPSIWGGNPLAYGVEIGAVLVGIAIYFIAR HINLRRGLDISLVFMEIPPE
Sequences:
>Translated_500_residues MSDKGLFVRGSTGLVREAGFVDAVSVNVANMSVGAALGTVGFTLASLPSVSGVNLVAASIIAFTLSIPQIITYTTLTKHI PRTGGDYVWVSRLLGPRFTWLVVGLVVGFIIESLAYYALIAIAGVGQLGTMLSTLGINISFTPLEVIGIGILYFAIVVFV NIMGTKYGIRLMTVLTIASIVTLFLALAVLYVVPKSVVISRVSSLLPSGVTYSKVASQYTGPYFALGPTIMMLPFFAIYI YPWLQAAPAIASEIKSRRAINWNLPTSAVLSMIMVTLGFAAMYYSMGFRFSTMAMANGYVNFWSAAMVASGNVVLAWIIG IGSVLWYLAVLAYGAIVIVRYLFALSFDRILPEFFSYVSPRLRSPVYAHLFDLVITAALIASAEALYSTFSSLYGAVVEA LIYFALVGVAAAVAAILNKVKLSRGVRVTLAVASILMVGVMGYISYQFLEYPSIWGGNPLAYGVEIGAVLVGIAIYFIAR HINLRRGLDISLVFMEIPPE >Mature_499_residues SDKGLFVRGSTGLVREAGFVDAVSVNVANMSVGAALGTVGFTLASLPSVSGVNLVAASIIAFTLSIPQIITYTTLTKHIP RTGGDYVWVSRLLGPRFTWLVVGLVVGFIIESLAYYALIAIAGVGQLGTMLSTLGINISFTPLEVIGIGILYFAIVVFVN IMGTKYGIRLMTVLTIASIVTLFLALAVLYVVPKSVVISRVSSLLPSGVTYSKVASQYTGPYFALGPTIMMLPFFAIYIY PWLQAAPAIASEIKSRRAINWNLPTSAVLSMIMVTLGFAAMYYSMGFRFSTMAMANGYVNFWSAAMVASGNVVLAWIIGI GSVLWYLAVLAYGAIVIVRYLFALSFDRILPEFFSYVSPRLRSPVYAHLFDLVITAALIASAEALYSTFSSLYGAVVEAL IYFALVGVAAAVAAILNKVKLSRGVRVTLAVASILMVGVMGYISYQFLEYPSIWGGNPLAYGVEIGAVLVGIAIYFIARH INLRRGLDISLVFMEIPPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53698; Mature: 53566
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKGLFVRGSTGLVREAGFVDAVSVNVANMSVGAALGTVGFTLASLPSVSGVNLVAASI CCCCCEEEECCCCCHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH IAFTLSIPQIITYTTLTKHIPRTGGDYVWVSRLLGPRFTWLVVGLVVGFIIESLAYYALI HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AIAGVGQLGTMLSTLGINISFTPLEVIGIGILYFAIVVFVNIMGTKYGIRLMTVLTIASI HHHCCHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VTLFLALAVLYVVPKSVVISRVSSLLPSGVTYSKVASQYTGPYFALGPTIMMLPFFAIYI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH YPWLQAAPAIASEIKSRRAINWNLPTSAVLSMIMVTLGFAAMYYSMGFRFSTMAMANGYV HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH NFWSAAMVASGNVVLAWIIGIGSVLWYLAVLAYGAIVIVRYLFALSFDRILPEFFSYVSP HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH RLRSPVYAHLFDLVITAALIASAEALYSTFSSLYGAVVEALIYFALVGVAAAVAAILNKV HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLSRGVRVTLAVASILMVGVMGYISYQFLEYPSIWGGNPLAYGVEIGAVLVGIAIYFIAR HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH HINLRRGLDISLVFMEIPPE HHHHCCCCCEEEEEEECCCC >Mature Secondary Structure SDKGLFVRGSTGLVREAGFVDAVSVNVANMSVGAALGTVGFTLASLPSVSGVNLVAASI CCCCEEEECCCCCHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH IAFTLSIPQIITYTTLTKHIPRTGGDYVWVSRLLGPRFTWLVVGLVVGFIIESLAYYALI HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AIAGVGQLGTMLSTLGINISFTPLEVIGIGILYFAIVVFVNIMGTKYGIRLMTVLTIASI HHHCCHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VTLFLALAVLYVVPKSVVISRVSSLLPSGVTYSKVASQYTGPYFALGPTIMMLPFFAIYI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH YPWLQAAPAIASEIKSRRAINWNLPTSAVLSMIMVTLGFAAMYYSMGFRFSTMAMANGYV HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH NFWSAAMVASGNVVLAWIIGIGSVLWYLAVLAYGAIVIVRYLFALSFDRILPEFFSYVSP HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH RLRSPVYAHLFDLVITAALIASAEALYSTFSSLYGAVVEALIYFALVGVAAAVAAILNKV HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLSRGVRVTLAVASILMVGVMGYISYQFLEYPSIWGGNPLAYGVEIGAVLVGIAIYFIAR HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH HINLRRGLDISLVFMEIPPE HHHHCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA