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The map label for this gene is rpl39e

Identifier: 159040789

GI number: 159040789

Start: 239986

End: 240144

Strand: Reverse

Name: rpl39e

Synonym: Cmaq_0202

Alternate gene names: 159040789

Gene position: 240144-239986 (Counterclockwise)

Preceding gene: 159040790

Following gene: 159040788

Centisome position: 11.56

GC content: 48.43

Gene sequence:

>159_bases
ATGGCTACCCATAAGCCATTGGGCTTCAAGCTCAGGCTGGCGTCAGCAGGGAAGTCTAATAGGAATCCACCAGCCTGGGT
CATGGTTAAAACAGACAGGAAGGTTACGTACAATACTAAGCGTAGGAATTGGAGGAGGGTTAAGCTTAAGTTAGGGTGA

Upstream 100 bases:

>100_bases
GAATTAAGGTTCCTATAACAGACGAAGAACTTAAAAAGATACTGGAAACGGTCTATAGCCAAACCAGGAGGGAGTATAGG
ATAAGGTTCAGGTGAGTAAT

Downstream 100 bases:

>100_bases
TTGAATGTCGAGTAATGAGATTATACTCACGATAAACCTAAGGGATGTTAAGGAGGCGTCAAGGAGAATAAGGGCGCCTT
ATGCAGCTAGGTTCATTAAG

Product: 50S ribosomal protein L39e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 52; Mature: 51

Protein sequence:

>52_residues
MATHKPLGFKLRLASAGKSNRNPPAWVMVKTDRKVTYNTKRRNWRRVKLKLG

Sequences:

>Translated_52_residues
MATHKPLGFKLRLASAGKSNRNPPAWVMVKTDRKVTYNTKRRNWRRVKLKLG
>Mature_51_residues
ATHKPLGFKLRLASAGKSNRNPPAWVMVKTDRKVTYNTKRRNWRRVKLKLG

Specific function: Unknown

COG id: COG2167

COG function: function code J; Ribosomal protein L39E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L39e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL39_CALMQ (A8MAL5)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001540041.1
- ProteinModelPortal:   A8MAL5
- SMR:   A8MAL5
- GeneID:   5709735
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_0202
- HOGENOM:   HBG727906
- OMA:   LTHPKRR
- BioCyc:   CMAQ397948:CMAQ_0202-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00629
- InterPro:   IPR000077
- InterPro:   IPR020083
- Gene3D:   G3DSA:1.10.1620.10
- PANTHER:   PTHR19970

Pfam domain/function: PF00832 Ribosomal_L39; SSF48662 Ribosomal_L39

EC number: NA

Molecular weight: Translated: 6078; Mature: 5947

Theoretical pI: Translated: 12.66; Mature: 12.66

Prosite motif: PS00051 RIBOSOMAL_L39E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATHKPLGFKLRLASAGKSNRNPPAWVMVKTDRKVTYNTKRRNWRRVKLKLG
CCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEECCCCCCEEEEEEEEC
>Mature Secondary Structure 
ATHKPLGFKLRLASAGKSNRNPPAWVMVKTDRKVTYNTKRRNWRRVKLKLG
CCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEECCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA