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The map label for this gene is dppC [H]

Identifier: 158425399

GI number: 158425399

Start: 4329536

End: 4330387

Strand: Direct

Name: dppC [H]

Synonym: AZC_3775

Alternate gene names: 158425399

Gene position: 4329536-4330387 (Clockwise)

Preceding gene: 158425398

Following gene: 158425400

Centisome position: 80.63

GC content: 69.25

Gene sequence:

>852_bases
ATGAAGCGCTTCTTCCTCGCCCTCCTGCGCAGCCGGTCCGGCCTCTTCGGCATGGTGCTGCTCGTCGCCTTCATCGGTGC
GGCGCTGCTCGCCCCGGTGCTGGATTTGCCCAATCCCGTGCGCGGCGACCTCAAGGCCCGCCTTGCCCCGCCCACCTGGA
CCTCGCCCTTCTCCCCCGGCGCCCATCCGCTGGGCACCGACCAGCTCGGCCGCGACATCCTGAGCCGCATCGTCCACGGC
AGCCAGATCACGCTGGCCGTGGCTGCGAGCGCCGTGGTGCTGGGCGGCATCGTCGGCGTATTCCTTGGCATCGTCGCCGG
TTATCGCGGCGGCATGGTGGACCGCATCCTCATGCGGCTCGTGGACATCCAGCTCGCCATCCCGCTCATGCTGCTGGCGT
TGCTGGTGGTGGCGGCGCTGGGCCCGAGCCTGTCCAACCTCATCGTGGTGCTCGCGGTGACGAGCTGGATCCGCTACGCC
CGCATCATCCGCGGGCAGGTGCTCTCCCTGCGCGAGCGCGAATTCGTGCTGGCGGCGCGGGCCATCAGCGCCCCCACCTC
GCGCATCATGCTGCGGCACATCCTGCCCAACGTGCTCACCCCTGCCCTGGTCGTGGCCACGCTGGAACTCGCCCGCATCA
TCATCATGGATGCGGCGCTGAGCTTCCTCGGCCTCGGCGTGCAGCCGCCCACCGCCTCCTGGGGCCGGATGCTGGCGGAA
GGCCGCACCTACATTTCCAGCGCCTGGTGGATCGTCACCTTCCCCGGCCTCGCCATCCTGCTCACCGTGCTGAGCGTGAA
TCTCGTGGGCGACTGGCTGCGGGACTATTTCGACCCGAGACTGAGGACCTGA

Upstream 100 bases:

>100_bases
GGGCGTCGCCATGATCGCCGCCATCTATGTGGGCATCAACCTGCTGGTCGACCTGCTCTATATGGTCATCGATCCGCGCA
TCGGGGGCCGGGGCTGAGCC

Downstream 100 bases:

>100_bases
CGCATGACCGCATTCGGCAATCCCTCCCGCATCGAGCGGCTGCGCACCCGGATGGCGCAGGCGGGCATCGACCTCATCGT
CTCCTTCAAGCCGGAGAACA

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKRFFLALLRSRSGLFGMVLLVAFIGAALLAPVLDLPNPVRGDLKARLAPPTWTSPFSPGAHPLGTDQLGRDILSRIVHG
SQITLAVAASAVVLGGIVGVFLGIVAGYRGGMVDRILMRLVDIQLAIPLMLLALLVVAALGPSLSNLIVVLAVTSWIRYA
RIIRGQVLSLREREFVLAARAISAPTSRIMLRHILPNVLTPALVVATLELARIIIMDAALSFLGLGVQPPTASWGRMLAE
GRTYISSAWWIVTFPGLAILLTVLSVNLVGDWLRDYFDPRLRT

Sequences:

>Translated_283_residues
MKRFFLALLRSRSGLFGMVLLVAFIGAALLAPVLDLPNPVRGDLKARLAPPTWTSPFSPGAHPLGTDQLGRDILSRIVHG
SQITLAVAASAVVLGGIVGVFLGIVAGYRGGMVDRILMRLVDIQLAIPLMLLALLVVAALGPSLSNLIVVLAVTSWIRYA
RIIRGQVLSLREREFVLAARAISAPTSRIMLRHILPNVLTPALVVATLELARIIIMDAALSFLGLGVQPPTASWGRMLAE
GRTYISSAWWIVTFPGLAILLTVLSVNLVGDWLRDYFDPRLRT
>Mature_283_residues
MKRFFLALLRSRSGLFGMVLLVAFIGAALLAPVLDLPNPVRGDLKARLAPPTWTSPFSPGAHPLGTDQLGRDILSRIVHG
SQITLAVAASAVVLGGIVGVFLGIVAGYRGGMVDRILMRLVDIQLAIPLMLLALLVVAALGPSLSNLIVVLAVTSWIRYA
RIIRGQVLSLREREFVLAARAISAPTSRIMLRHILPNVLTPALVVATLELARIIIMDAALSFLGLGVQPPTASWGRMLAE
GRTYISSAWWIVTFPGLAILLTVLSVNLVGDWLRDYFDPRLRT

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=252, Percent_Identity=42.0634920634921, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1789964, Length=246, Percent_Identity=49.5934959349593, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1787054, Length=221, Percent_Identity=46.1538461538462, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789889, Length=246, Percent_Identity=40.2439024390244, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1787498, Length=229, Percent_Identity=39.3013100436681, Blast_Score=157, Evalue=5e-40,
Organism=Escherichia coli, GI1787549, Length=231, Percent_Identity=39.3939393939394, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1788505, Length=218, Percent_Identity=30.2752293577982, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30533; Mature: 30533

Theoretical pI: Translated: 11.94; Mature: 11.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHCHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure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CHHHHHHCHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]