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The map label for this gene is dppB [H]

Identifier: 158425398

GI number: 158425398

Start: 4328612

End: 4329532

Strand: Direct

Name: dppB [H]

Synonym: AZC_3774

Alternate gene names: 158425398

Gene position: 4328612-4329532 (Clockwise)

Preceding gene: 158425397

Following gene: 158425399

Centisome position: 80.61

GC content: 66.99

Gene sequence:

>921_bases
GTGACGCGCTATATGGCGGCGAAATTCGGCGAGGCGCTCATCGCCATCTGGGGCGTGGTGACGATCGTCTTCTTCGTCAC
GCGCCTTGTGGGCGACCCGGTGGCGCTGCTGCTGCCCGTGGGCGCGTCGCCGGAGCAGATGCAAGCGCTGACCGCCGCCC
TCGGCCTCGACAAGCCCCTGTGGCAGCAATACCTCACCTTCTTCTGGCAGGTGCTGGGCGGGGACTTCGGCCAGTCCTTC
CAGTTCAACCGGCCCGCCATGGAGGTGGTGCTGGAGCGGATGCCCGCCACCATCCAGCTTGCCCTCGTCGCCATCGTGCT
CGGCACCGTCATCGGCGGGCTCGCCGGCTCCATCGCCGCGACACGGCGCGGGTCGGTTATTGAATTCGTGGTCATGACTC
TGGCCCTACTCGGTCAGGCGACCCCGGTCTTCTGGCTCGGCATCATGCTGATCCTGCTCTTCGCGGTGGATCTCGGCTGG
CTGCCCACCGGCGGCTATGGTTCGCCGAGCCATCTGGTTCTGCCCGCCTTCACGCTCGCCGTCTTCGTCAGCGCCTCCAT
CGCCCGGCTGCTGCGCTCCAGCATGCTGGACGTGCTGAAGGAGGATTATGTGCGCACCGCCCGTGCCAAGGGCCTGCTGC
CGGGCACCATCTTCGTCTGGCATCTGGCGCGCAACGCGCTGATCCCGGTGGTGACCATGATCGGCATCCTCACCGGCGAA
CTGCTCGGCGGCTCGGTGGTGACGGAGACGGTGTTTGCCTGGCCGGGCGTCGGCCGCCTGATCGTGCAGGCCATCGAGAC
CAAGGACTTCCCGGTCATCCAGGCGGGCGTCGCCATGATCGCCGCCATCTATGTGGGCATCAACCTGCTGGTCGACCTGC
TCTATATGGTCATCGATCCGCGCATCGGGGGCCGGGGCTGA

Upstream 100 bases:

>100_bases
CGGAGCTTCTGGAAATTCCGGGCGCGAACCATTCCGTCCATATCGAGGCCAACGCACAGGTGCTCGCCGGCATCCGCTCC
TTCCTCGAAAGGACGGCCCC

Downstream 100 bases:

>100_bases
GCCATGAAGCGCTTCTTCCTCGCCCTCCTGCGCAGCCGGTCCGGCCTCTTCGGCATGGTGCTGCTCGTCGCCTTCATCGG
TGCGGCGCTGCTCGCCCCGG

Product: oligopeptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTRYMAAKFGEALIAIWGVVTIVFFVTRLVGDPVALLLPVGASPEQMQALTAALGLDKPLWQQYLTFFWQVLGGDFGQSF
QFNRPAMEVVLERMPATIQLALVAIVLGTVIGGLAGSIAATRRGSVIEFVVMTLALLGQATPVFWLGIMLILLFAVDLGW
LPTGGYGSPSHLVLPAFTLAVFVSASIARLLRSSMLDVLKEDYVRTARAKGLLPGTIFVWHLARNALIPVVTMIGILTGE
LLGGSVVTETVFAWPGVGRLIVQAIETKDFPVIQAGVAMIAAIYVGINLLVDLLYMVIDPRIGGRG

Sequences:

>Translated_306_residues
MTRYMAAKFGEALIAIWGVVTIVFFVTRLVGDPVALLLPVGASPEQMQALTAALGLDKPLWQQYLTFFWQVLGGDFGQSF
QFNRPAMEVVLERMPATIQLALVAIVLGTVIGGLAGSIAATRRGSVIEFVVMTLALLGQATPVFWLGIMLILLFAVDLGW
LPTGGYGSPSHLVLPAFTLAVFVSASIARLLRSSMLDVLKEDYVRTARAKGLLPGTIFVWHLARNALIPVVTMIGILTGE
LLGGSVVTETVFAWPGVGRLIVQAIETKDFPVIQAGVAMIAAIYVGINLLVDLLYMVIDPRIGGRG
>Mature_305_residues
TRYMAAKFGEALIAIWGVVTIVFFVTRLVGDPVALLLPVGASPEQMQALTAALGLDKPLWQQYLTFFWQVLGGDFGQSFQ
FNRPAMEVVLERMPATIQLALVAIVLGTVIGGLAGSIAATRRGSVIEFVVMTLALLGQATPVFWLGIMLILLFAVDLGWL
PTGGYGSPSHLVLPAFTLAVFVSASIARLLRSSMLDVLKEDYVRTARAKGLLPGTIFVWHLARNALIPVVTMIGILTGEL
LGGSVVTETVFAWPGVGRLIVQAIETKDFPVIQAGVAMIAAIYVGINLLVDLLYMVIDPRIGGRG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=39.3491124260355, Blast_Score=241, Evalue=4e-65,
Organism=Escherichia coli, GI1787053, Length=283, Percent_Identity=43.4628975265018, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1789888, Length=306, Percent_Identity=41.1764705882353, Blast_Score=220, Evalue=9e-59,
Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=34.4155844155844, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787761, Length=319, Percent_Identity=38.871473354232, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=31.25, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788504, Length=286, Percent_Identity=27.2727272727273, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32808; Mature: 32677

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYMAAKFGEALIAIWGVVTIVFFVTRLVGDPVALLLPVGASPEQMQALTAALGLDKPL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCHH
WQQYLTFFWQVLGGDFGQSFQFNRPAMEVVLERMPATIQLALVAIVLGTVIGGLAGSIAA
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
TRRGSVIEFVVMTLALLGQATPVFWLGIMLILLFAVDLGWLPTGGYGSPSHLVLPAFTLA
HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
VFVSASIARLLRSSMLDVLKEDYVRTARAKGLLPGTIFVWHLARNALIPVVTMIGILTGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGGSVVTETVFAWPGVGRLIVQAIETKDFPVIQAGVAMIAAIYVGINLLVDLLYMVIDP
HHCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RIGGRG
CCCCCC
>Mature Secondary Structure 
TRYMAAKFGEALIAIWGVVTIVFFVTRLVGDPVALLLPVGASPEQMQALTAALGLDKPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCHH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CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]