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The map label for this gene is yciR [C]

Identifier: 158425164

GI number: 158425164

Start: 4065402

End: 4067042

Strand: Direct

Name: yciR [C]

Synonym: AZC_3540

Alternate gene names: 158425164

Gene position: 4065402-4067042 (Clockwise)

Preceding gene: 158425163

Following gene: 158425165

Centisome position: 75.71

GC content: 67.28

Gene sequence:

>1641_bases
ATGCAAGGAACGGAGGGAGGCGTGAGCAAGCACACCACCTCTGCCCCCTTGGTCACGCCCATCTCCGTGCTGCTGACACT
GCTGGCCACGCTGGTGATCATGGGGATCACCTCGACGTCGTGGGAATTCATTGTTCAGGACCAGTTGCTCTCGCGCTTCG
GCGTGAATTTCGAGACTTTCGGCAGCCACGACCGCTGGCGCTTCATCTACACGTCCGTGATCTTCGCCACGCTGAGCCAG
ATCGGCCCCGCGCTGCTGCTCTTCCGGCTCATGCGGCGGCTCGACCGGGCACGCATGGAGGTCATCAAGGCGCGCGAGAA
GGCGGATTCCCTCGCCCGTCACGACCCGCTGACCGGCCTCGCCAACCGCCGCATCCTGCGCGACACCCTGCGCAAGCGCC
TCGGCGCTGCGGGCGCCAACGGGCCGCACACCGCGGTGCTGCTGGTGGACATCGACCGCTTCCGCTCCGTTGCCGACCTG
CACGGCCACAGCCTGTCGGATCTCGTGCTGGTGGAGGTGGCGAACCGGCTGAAGTCGCTGCTGCCCTCGGATGCCGTGCT
CGCCCGCCTCGGCGGCGAGGAATTCATCGCCGTGATGCCCCGCCCCGCCTCGCTGGACGCTCTGGGCAAGCTGGCGCAGC
ACATCATCAACCACCTTTCCTCGCCCTACCAGTTGAACGGTCTGGATGCCCGGCTCGGCGCCACGGTGGGCATCGCCGTC
TCCCCCGACAACGGCACGGACGAGATGGAGCTGATGCGCGCGGCCGAAGCCGCGCTTTACCGCGCCAAGGCCAACCCGGG
GACCTACCGCTTCTTCCAGCCGGCCATGGACCGCGAGCTGAAGCAGACCCTCCGCCTCCAGCGCGACCTGCACACCGCCA
TCGCCAACGGCGCCATCGTGCCCTTCTACCAGCCCTTCCTGCGGCTCTCGGACAATTCCCTGGCCGGGTTCGAGGTGCTG
GCCCGCTGGAACCACCCCATCCGCGGATTCATCTCGCCGGACGCCTTCATTCCCGTGGCCGAGGAAATCGGCCTCATCGG
CCAGTTGACCACCGCCATCCTGCGGCAGGCCTGCCTCGACGCCTCGAAGTGGCCGCAGAACCTGAAGATCTCGGTCAACC
TGTCGCCGGTACAGCTCAAGGAAGTCTCGCTGCCGGACCAGATCTACCGCACCCTGCGCACCGCCGGCTTCCCGCCCCAG
CGGCTGGAGATCGAGATCACCGAGACCGGCCTCGTCAATGACGTGACCACCGCCCGCGCCATCCTCACCAACTTCCGCAC
CGCTGGCATCGAGGTGGCGCTGGACGATTTCGGCACCGGCTATTCGAGCCTCCAGAACCTGCGCAGCTTCCCGGTCACCA
AGCTGAAGATCGACAAGTCGTTCGTGCGCTCCATGAACACAGATCCGCAGTCGAAGAGCCTCGTGGTGGGCATTCTCGCC
ATGAGCAAGAGCCTCGGCATCCTCACCACGGCGGAGGGCATCGAGGAAGCGGGCGAAGGCGTCTGGCTCGGCTCCATCGG
CTGCGACTACGGGCAGGGCTATTGCTACGCCAAGCCCATGCGCGGCGAGGAAGTGCCCGCCTTCCTCAACAGCCGGGCAG
CCGCTCCGGCGCCCGACGCCGGCGCCCGCCAGCGGGCGTGA

Upstream 100 bases:

>100_bases
ACCGGGGACGAAATTGCATAATCATGGCGCCTGACATGCCACGTGTCTTGCGGCCCGTGGCAGAGGCCTCTTAAAGAATG
CGCCGCGTGCGTGAACCAAC

Downstream 100 bases:

>100_bases
GGGCAACACGACGCGCGACGTTTCCGATAGCTCCGACGAAGGCGGGGCATGCCTCTGGACGGGCGCGTGCTGCATAAGCA
CTGTGCCCGCCGCATCATGA

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MQGTEGGVSKHTTSAPLVTPISVLLTLLATLVIMGITSTSWEFIVQDQLLSRFGVNFETFGSHDRWRFIYTSVIFATLSQ
IGPALLLFRLMRRLDRARMEVIKAREKADSLARHDPLTGLANRRILRDTLRKRLGAAGANGPHTAVLLVDIDRFRSVADL
HGHSLSDLVLVEVANRLKSLLPSDAVLARLGGEEFIAVMPRPASLDALGKLAQHIINHLSSPYQLNGLDARLGATVGIAV
SPDNGTDEMELMRAAEAALYRAKANPGTYRFFQPAMDRELKQTLRLQRDLHTAIANGAIVPFYQPFLRLSDNSLAGFEVL
ARWNHPIRGFISPDAFIPVAEEIGLIGQLTTAILRQACLDASKWPQNLKISVNLSPVQLKEVSLPDQIYRTLRTAGFPPQ
RLEIEITETGLVNDVTTARAILTNFRTAGIEVALDDFGTGYSSLQNLRSFPVTKLKIDKSFVRSMNTDPQSKSLVVGILA
MSKSLGILTTAEGIEEAGEGVWLGSIGCDYGQGYCYAKPMRGEEVPAFLNSRAAAPAPDAGARQRA

Sequences:

>Translated_546_residues
MQGTEGGVSKHTTSAPLVTPISVLLTLLATLVIMGITSTSWEFIVQDQLLSRFGVNFETFGSHDRWRFIYTSVIFATLSQ
IGPALLLFRLMRRLDRARMEVIKAREKADSLARHDPLTGLANRRILRDTLRKRLGAAGANGPHTAVLLVDIDRFRSVADL
HGHSLSDLVLVEVANRLKSLLPSDAVLARLGGEEFIAVMPRPASLDALGKLAQHIINHLSSPYQLNGLDARLGATVGIAV
SPDNGTDEMELMRAAEAALYRAKANPGTYRFFQPAMDRELKQTLRLQRDLHTAIANGAIVPFYQPFLRLSDNSLAGFEVL
ARWNHPIRGFISPDAFIPVAEEIGLIGQLTTAILRQACLDASKWPQNLKISVNLSPVQLKEVSLPDQIYRTLRTAGFPPQ
RLEIEITETGLVNDVTTARAILTNFRTAGIEVALDDFGTGYSSLQNLRSFPVTKLKIDKSFVRSMNTDPQSKSLVVGILA
MSKSLGILTTAEGIEEAGEGVWLGSIGCDYGQGYCYAKPMRGEEVPAFLNSRAAAPAPDAGARQRA
>Mature_546_residues
MQGTEGGVSKHTTSAPLVTPISVLLTLLATLVIMGITSTSWEFIVQDQLLSRFGVNFETFGSHDRWRFIYTSVIFATLSQ
IGPALLLFRLMRRLDRARMEVIKAREKADSLARHDPLTGLANRRILRDTLRKRLGAAGANGPHTAVLLVDIDRFRSVADL
HGHSLSDLVLVEVANRLKSLLPSDAVLARLGGEEFIAVMPRPASLDALGKLAQHIINHLSSPYQLNGLDARLGATVGIAV
SPDNGTDEMELMRAAEAALYRAKANPGTYRFFQPAMDRELKQTLRLQRDLHTAIANGAIVPFYQPFLRLSDNSLAGFEVL
ARWNHPIRGFISPDAFIPVAEEIGLIGQLTTAILRQACLDASKWPQNLKISVNLSPVQLKEVSLPDQIYRTLRTAGFPPQ
RLEIEITETGLVNDVTTARAILTNFRTAGIEVALDDFGTGYSSLQNLRSFPVTKLKIDKSFVRSMNTDPQSKSLVVGILA
MSKSLGILTTAEGIEEAGEGVWLGSIGCDYGQGYCYAKPMRGEEVPAFLNSRAAAPAPDAGARQRA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=422, Percent_Identity=35.0710900473934, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI87081921, Length=438, Percent_Identity=33.1050228310502, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI226510982, Length=424, Percent_Identity=27.5943396226415, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=37.6569037656904, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI87081845, Length=249, Percent_Identity=36.144578313253, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=35.0210970464135, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=32.9218106995885, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=34.3220338983051, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=31.9230769230769, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788849, Length=434, Percent_Identity=25.1152073732719, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787055, Length=256, Percent_Identity=28.515625, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI87082096, Length=435, Percent_Identity=24.5977011494253, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1788381, Length=426, Percent_Identity=24.8826291079812, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081881, Length=189, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=30.952380952381, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=31.3725490196078, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=27.6315789473684, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=31.3253012048193, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=32.3170731707317, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=199, Percent_Identity=26.1306532663317, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 59645; Mature: 59645

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTEGGVSKHTTSAPLVTPISVLLTLLATLVIMGITSTSWEFIVQDQLLSRFGVNFETF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEC
GSHDRWRFIYTSVIFATLSQIGPALLLFRLMRRLDRARMEVIKAREKADSLARHDPLTGL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ANRRILRDTLRKRLGAAGANGPHTAVLLVDIDRFRSVADLHGHSLSDLVLVEVANRLKSL
HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LPSDAVLARLGGEEFIAVMPRPASLDALGKLAQHIINHLSSPYQLNGLDARLGATVGIAV
CCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCEECCCEEEEEE
SPDNGTDEMELMRAAEAALYRAKANPGTYRFFQPAMDRELKQTLRLQRDLHTAIANGAIV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCC
PFYQPFLRLSDNSLAGFEVLARWNHPIRGFISPDAFIPVAEEIGLIGQLTTAILRQACLD
HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
ASKWPQNLKISVNLSPVQLKEVSLPDQIYRTLRTAGFPPQRLEIEITETGLVNDVTTARA
HHCCCCCCEEEEECCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHH
ILTNFRTAGIEVALDDFGTGYSSLQNLRSFPVTKLKIDKSFVRSMNTDPQSKSLVVGILA
HHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCCHHEEEHHH
MSKSLGILTTAEGIEEAGEGVWLGSIGCDYGQGYCYAKPMRGEEVPAFLNSRAAAPAPDA
HHCCCCCEEEHHHHHHHCCEEEEECCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCC
GARQRA
CCCCCC
>Mature Secondary Structure
MQGTEGGVSKHTTSAPLVTPISVLLTLLATLVIMGITSTSWEFIVQDQLLSRFGVNFETF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEC
GSHDRWRFIYTSVIFATLSQIGPALLLFRLMRRLDRARMEVIKAREKADSLARHDPLTGL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ANRRILRDTLRKRLGAAGANGPHTAVLLVDIDRFRSVADLHGHSLSDLVLVEVANRLKSL
HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LPSDAVLARLGGEEFIAVMPRPASLDALGKLAQHIINHLSSPYQLNGLDARLGATVGIAV
CCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCEECCCEEEEEE
SPDNGTDEMELMRAAEAALYRAKANPGTYRFFQPAMDRELKQTLRLQRDLHTAIANGAIV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCC
PFYQPFLRLSDNSLAGFEVLARWNHPIRGFISPDAFIPVAEEIGLIGQLTTAILRQACLD
HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
ASKWPQNLKISVNLSPVQLKEVSLPDQIYRTLRTAGFPPQRLEIEITETGLVNDVTTARA
HHCCCCCCEEEEECCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHH
ILTNFRTAGIEVALDDFGTGYSSLQNLRSFPVTKLKIDKSFVRSMNTDPQSKSLVVGILA
HHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCCHHEEEHHH
MSKSLGILTTAEGIEEAGEGVWLGSIGCDYGQGYCYAKPMRGEEVPAFLNSRAAAPAPDA
HHCCCCCEEEHHHHHHHCCEEEEECCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCC
GARQRA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]