Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 158425163

GI number: 158425163

Start: 4063816

End: 4065375

Strand: Direct

Name: cph2 [H]

Synonym: AZC_3539

Alternate gene names: 158425163

Gene position: 4063816-4065375 (Clockwise)

Preceding gene: 158425162

Following gene: 158425164

Centisome position: 75.68

GC content: 67.37

Gene sequence:

>1560_bases
GTGCTGGGAGGGAGCGCTCGCCGGATGGAACAGGTCAGGCCCGAGGTGTTGCAGCGCGCGGTGCGATTCTCCCGCGTGCT
CAGCCTGCTGGCCGCAGTCGCTGTCTGCGCGATCCTCACCATGACCGTCATCACCATCGTGCTGTCGCGGCAGGATGCGA
CGGAGGCGAATGCCAGCACCACGGAAAACGTGCTCCAGTTCGCGGCCCTGGAACTGGCGGACGACATCGGCGCCCTCCAC
ACCATGCTGGTCGATGCCCGCTCCGTCTTCACTGACCGCCAGTCCTGGTCTTTGACGGACGCCCAGCTTCAGCGCTGGAT
GCAGGTCCGCACCCAACGCGGGCGCGAGCTCGAGGGCATTGCGATAACCGATCCCGGCGGGCGCATCCTCCTGTCGTCCT
ACTCCGACGTTCCGGCGGACTTCACCGTCGATGACCGCGACTATTTCGTCGTCCATCGCGACAATCCCAGCGCCGGCCTC
TACGTCAGCCTTGTCCTGCGCAACCGCTTCACCGGGGAGCCTGGCATCATGGTCAGCATCGGCCGGCGCGCGCCGGACGG
CACCTTCCTCGGCATCATGCTGGCCCTGGTGCGCCTCTCCTATCTCGACTCCCTGCTGGACGGCGGGCGGCTGGGACCGG
AAGGCGCCCTCAGCCTCTGGCGTAGCGACGGCGCCCTGGTGCTGCGGAACCGGGTCAGCGGCGGCCATGAAGACCCGCAG
GGTCGCGCCATATCGCCAACCTATCTTGCCCAGATCCTCAACACTCACCACGGCACGTTCGACGCCGCCCTCCCGCCCGG
AACGCCGGTGCGCCGGCACACCTTCGTCCATGTGGCGGACGCGCCGCTCATCGTGTCCGCTTCCATCCCGGTCAGCGAGA
TCTACAGCCGCTGGAGCCACCGGGCGCTCGCGATGGTGCTCGTCACGTCGCTCGCTGTGAGCGCGATCATGGCCCTCACC
GTGCTCTTCCGGCGTGAGCTGCTCCGCCGCGCCGAAGCGGAGGCACAGCTGAACGAGCTGGCGCGGGCGGACGGCCTCAC
CGGTATCGCCAACCGCCGCCGCTTCGATGAACGGCTTGGCCAGGAGTGGCGCCGGTCCTACCGGTCCTCCGGAACGATGG
CCTTGCTGATGATCGACGTGGATCACTTCAAGGCGTTCAACGACACCCACGGGCACTGGACCGGCGACGACCTGCTCATC
CGCATCGCCGCCACCCTTTCGCAGACGGTGCACCGGCCGGGCGACCTCATCGCCCGGTATGGCGGCGAGGAGTTCGCGGC
CATTCTTCCCGACACCGACCGCGAGGGGGCATTGCGGATTGCCGAGCGCATTCTCGATGCGGTCCGCGCGCTCCGCTTCG
AGGACAGCGCCGGACAAGTCTTGCCCGTTACGGTCAGCATAGGTGCCTGCGCCCTGTCGCCCTCCCCGGGGCAACAGGTT
GCAGACATCGTGCGGCTTGCCGACGCAGCGTTGTACGAAGCAAAGGACCGGGGACGAAATTGCATAATCATGGCGCCTGA
CATGCCACGTGTCTTGCGGCCCGTGGCAGAGGCCTCTTAA

Upstream 100 bases:

>100_bases
CACCTGACGCAAGGTCCGCACAAGCTGCGCCTGGCACCTTACCCTGCTACAGCCCGACCCATCCGCCCCACGTGTCACTT
CGTCGGCAGGAACGGCAGGC

Downstream 100 bases:

>100_bases
AGAATGCGCCGCGTGCGTGAACCAACATGCAAGGAACGGAGGGAGGCGTGAGCAAGCACACCACCTCTGCCCCCTTGGTC
ACGCCCATCTCCGTGCTGCT

Product: GGDEF precursor

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MLGGSARRMEQVRPEVLQRAVRFSRVLSLLAAVAVCAILTMTVITIVLSRQDATEANASTTENVLQFAALELADDIGALH
TMLVDARSVFTDRQSWSLTDAQLQRWMQVRTQRGRELEGIAITDPGGRILLSSYSDVPADFTVDDRDYFVVHRDNPSAGL
YVSLVLRNRFTGEPGIMVSIGRRAPDGTFLGIMLALVRLSYLDSLLDGGRLGPEGALSLWRSDGALVLRNRVSGGHEDPQ
GRAISPTYLAQILNTHHGTFDAALPPGTPVRRHTFVHVADAPLIVSASIPVSEIYSRWSHRALAMVLVTSLAVSAIMALT
VLFRRELLRRAEAEAQLNELARADGLTGIANRRRFDERLGQEWRRSYRSSGTMALLMIDVDHFKAFNDTHGHWTGDDLLI
RIAATLSQTVHRPGDLIARYGGEEFAAILPDTDREGALRIAERILDAVRALRFEDSAGQVLPVTVSIGACALSPSPGQQV
ADIVRLADAALYEAKDRGRNCIIMAPDMPRVLRPVAEAS

Sequences:

>Translated_519_residues
MLGGSARRMEQVRPEVLQRAVRFSRVLSLLAAVAVCAILTMTVITIVLSRQDATEANASTTENVLQFAALELADDIGALH
TMLVDARSVFTDRQSWSLTDAQLQRWMQVRTQRGRELEGIAITDPGGRILLSSYSDVPADFTVDDRDYFVVHRDNPSAGL
YVSLVLRNRFTGEPGIMVSIGRRAPDGTFLGIMLALVRLSYLDSLLDGGRLGPEGALSLWRSDGALVLRNRVSGGHEDPQ
GRAISPTYLAQILNTHHGTFDAALPPGTPVRRHTFVHVADAPLIVSASIPVSEIYSRWSHRALAMVLVTSLAVSAIMALT
VLFRRELLRRAEAEAQLNELARADGLTGIANRRRFDERLGQEWRRSYRSSGTMALLMIDVDHFKAFNDTHGHWTGDDLLI
RIAATLSQTVHRPGDLIARYGGEEFAAILPDTDREGALRIAERILDAVRALRFEDSAGQVLPVTVSIGACALSPSPGQQV
ADIVRLADAALYEAKDRGRNCIIMAPDMPRVLRPVAEAS
>Mature_519_residues
MLGGSARRMEQVRPEVLQRAVRFSRVLSLLAAVAVCAILTMTVITIVLSRQDATEANASTTENVLQFAALELADDIGALH
TMLVDARSVFTDRQSWSLTDAQLQRWMQVRTQRGRELEGIAITDPGGRILLSSYSDVPADFTVDDRDYFVVHRDNPSAGL
YVSLVLRNRFTGEPGIMVSIGRRAPDGTFLGIMLALVRLSYLDSLLDGGRLGPEGALSLWRSDGALVLRNRVSGGHEDPQ
GRAISPTYLAQILNTHHGTFDAALPPGTPVRRHTFVHVADAPLIVSASIPVSEIYSRWSHRALAMVLVTSLAVSAIMALT
VLFRRELLRRAEAEAQLNELARADGLTGIANRRRFDERLGQEWRRSYRSSGTMALLMIDVDHFKAFNDTHGHWTGDDLLI
RIAATLSQTVHRPGDLIARYGGEEFAAILPDTDREGALRIAERILDAVRALRFEDSAGQVLPVTVSIGACALSPSPGQQV
ADIVRLADAALYEAKDRGRNCIIMAPDMPRVLRPVAEAS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=39.3063583815029, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=35.4651162790698, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=35.7954545454545, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=34.5744680851064, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=38.2857142857143, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=33.9393939393939, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082007, Length=206, Percent_Identity=27.1844660194175, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=33.5195530726257, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=230, Percent_Identity=30.8695652173913, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=35.0574712643678, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1788085, Length=180, Percent_Identity=31.6666666666667, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87081977, Length=233, Percent_Identity=27.4678111587983, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=31.4465408805031, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=102, Percent_Identity=34.3137254901961, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 56851; Mature: 56851

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGSARRMEQVRPEVLQRAVRFSRVLSLLAAVAVCAILTMTVITIVLSRQDATEANAST
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
TENVLQFAALELADDIGALHTMLVDARSVFTDRQSWSLTDAQLQRWMQVRTQRGRELEGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE
AITDPGGRILLSSYSDVPADFTVDDRDYFVVHRDNPSAGLYVSLVLRNRFTGEPGIMVSI
EEECCCCEEEEECCCCCCCCCEECCCCEEEEECCCCCCCEEEEEEEHHCCCCCCCEEEEE
GRRAPDGTFLGIMLALVRLSYLDSLLDGGRLGPEGALSLWRSDGALVLRNRVSGGHEDPQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCC
GRAISPTYLAQILNTHHGTFDAALPPGTPVRRHTFVHVADAPLIVSASIPVSEIYSRWSH
CCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCEEEECCCCHHHHHHHHHH
RALAMVLVTSLAVSAIMALTVLFRRELLRRAEAEAQLNELARADGLTGIANRRRFDERLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QEWRRSYRSSGTMALLMIDVDHFKAFNDTHGHWTGDDLLIRIAATLSQTVHRPGDLIARY
HHHHHHHCCCCCEEEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHC
GGEEFAAILPDTDREGALRIAERILDAVRALRFEDSAGQVLPVTVSIGACALSPSPGQQV
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECEEECCCCCHHHH
ADIVRLADAALYEAKDRGRNCIIMAPDMPRVLRPVAEAS
HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCC
>Mature Secondary Structure
MLGGSARRMEQVRPEVLQRAVRFSRVLSLLAAVAVCAILTMTVITIVLSRQDATEANAST
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
TENVLQFAALELADDIGALHTMLVDARSVFTDRQSWSLTDAQLQRWMQVRTQRGRELEGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE
AITDPGGRILLSSYSDVPADFTVDDRDYFVVHRDNPSAGLYVSLVLRNRFTGEPGIMVSI
EEECCCCEEEEECCCCCCCCCEECCCCEEEEECCCCCCCEEEEEEEHHCCCCCCCEEEEE
GRRAPDGTFLGIMLALVRLSYLDSLLDGGRLGPEGALSLWRSDGALVLRNRVSGGHEDPQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCC
GRAISPTYLAQILNTHHGTFDAALPPGTPVRRHTFVHVADAPLIVSASIPVSEIYSRWSH
CCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCEEEECCCCHHHHHHHHHH
RALAMVLVTSLAVSAIMALTVLFRRELLRRAEAEAQLNELARADGLTGIANRRRFDERLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QEWRRSYRSSGTMALLMIDVDHFKAFNDTHGHWTGDDLLIRIAATLSQTVHRPGDLIARY
HHHHHHHCCCCCEEEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHC
GGEEFAAILPDTDREGALRIAERILDAVRALRFEDSAGQVLPVTVSIGACALSPSPGQQV
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECEEECCCCCHHHH
ADIVRLADAALYEAKDRGRNCIIMAPDMPRVLRPVAEAS
HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]