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The map label for this gene is dppB [H]

Identifier: 158424251

GI number: 158424251

Start: 2962809

End: 2963816

Strand: Direct

Name: dppB [H]

Synonym: AZC_2627

Alternate gene names: 158424251

Gene position: 2962809-2963816 (Clockwise)

Preceding gene: 158424250

Following gene: 158424252

Centisome position: 55.18

GC content: 66.67

Gene sequence:

>1008_bases
TTGCAACGGCGGCGCCCCGCCCGGGTCGCCGCCGCAGACCGGAAAGCCGATCCCATGCTCGTCTATGTGCTGCGCCGCAT
TCTCTACACGGTTCCGATCGCCCTGGGCGTCTCGCTCGTGTGTTTCGCGCTGATCCATCTGGCACCCGGCGACCCCTTGA
GCGCCATCATCCCGGAAGGCGCCTCGCCCGAGACCGTGGCACAGGTGCGGGCGGCCTACGGCTTCGACCGGCCGCTGCCG
GTGCAGTATCTGAAATGGCTCCAGCACGTGGTGATGGGCGATTTCGGCAATTCCATCATGACCCAACGCCCGGTCATGGC
CGAGGTGCTGCCGGCGCTTGCCAACACGCTCATGCTCGCCGCCGCCGCCGTCCTGTTCGGCTTTGCCGCCGGGTGCCTGC
TGGGGGTCGTCTCGGGCTATCTGGCCGGCAAGCCCACCGACAAGGCGGTCACCGCCGTTTCCATCACCGGCGTCTCCATT
CCACACTATTGGCTGGGCATGGTGCTGATGGTGATCTTCGCGGTGGAGCTGAACCTGCTTCCCGCCACCGGCATGGGCGA
GGGCGGCTCAGGCGCCTTCGGCTTCGGCTGGGACAGCCTGCAATATCTCATCCTGCCCGCTCTCACCCTGTCGGTCATTC
CGGCGGGCATCATCGCCCGCTCCGTGCGCGGCACCATCGCCGAGGTGCGCAAGCAGGATTTCATGCAGACCCTGCACGCC
AAGGGCCTGCCCGGCCGCCGCATCTTCGTGCATGTGGTCAAGAATGCCTTGCCCGCCGTGCTGGCGGTGATGGGCCTCCA
GCTCGCGCAGCTGCTGGGGGGATCGATCCTCGTGGAGACGGTGTTCTCCTGGCCGGGTACGGGTTTCTTGCTCAACAACG
CCATCTTCACCCGCGACCTGCCGGTGCTGCAGGGCACGATCCTCGTGCTGGCGATGTTCTTCGTGCTCATCAATCTCGCC
GTCGACGTGGTGCAGACCGCCGTCGATCCCCGCATCAAGCGCGCCTGA

Upstream 100 bases:

>100_bases
CCTCAATCCCCGCGCCCTGCGGCCCAATGTGAAGGGGTTCGTGCAGGCGCAAAGCTGGTTCCAGGATCTCACCCCCGTCA
TCGTCGAGTAGCGCGCCCCC

Downstream 100 bases:

>100_bases
GGGAGAGCCACCCATGTCCCAGCCCGCCATCGCCCTCGCCGGCGCCAAGGCCGCCACCAAGGGCAAGCGCCCCGCCACCC
GCAGCTTCTGGCGCAATGTC

Product: ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MQRRRPARVAAADRKADPMLVYVLRRILYTVPIALGVSLVCFALIHLAPGDPLSAIIPEGASPETVAQVRAAYGFDRPLP
VQYLKWLQHVVMGDFGNSIMTQRPVMAEVLPALANTLMLAAAAVLFGFAAGCLLGVVSGYLAGKPTDKAVTAVSITGVSI
PHYWLGMVLMVIFAVELNLLPATGMGEGGSGAFGFGWDSLQYLILPALTLSVIPAGIIARSVRGTIAEVRKQDFMQTLHA
KGLPGRRIFVHVVKNALPAVLAVMGLQLAQLLGGSILVETVFSWPGTGFLLNNAIFTRDLPVLQGTILVLAMFFVLINLA
VDVVQTAVDPRIKRA

Sequences:

>Translated_335_residues
MQRRRPARVAAADRKADPMLVYVLRRILYTVPIALGVSLVCFALIHLAPGDPLSAIIPEGASPETVAQVRAAYGFDRPLP
VQYLKWLQHVVMGDFGNSIMTQRPVMAEVLPALANTLMLAAAAVLFGFAAGCLLGVVSGYLAGKPTDKAVTAVSITGVSI
PHYWLGMVLMVIFAVELNLLPATGMGEGGSGAFGFGWDSLQYLILPALTLSVIPAGIIARSVRGTIAEVRKQDFMQTLHA
KGLPGRRIFVHVVKNALPAVLAVMGLQLAQLLGGSILVETVFSWPGTGFLLNNAIFTRDLPVLQGTILVLAMFFVLINLA
VDVVQTAVDPRIKRA
>Mature_335_residues
MQRRRPARVAAADRKADPMLVYVLRRILYTVPIALGVSLVCFALIHLAPGDPLSAIIPEGASPETVAQVRAAYGFDRPLP
VQYLKWLQHVVMGDFGNSIMTQRPVMAEVLPALANTLMLAAAAVLFGFAAGCLLGVVSGYLAGKPTDKAVTAVSITGVSI
PHYWLGMVLMVIFAVELNLLPATGMGEGGSGAFGFGWDSLQYLILPALTLSVIPAGIIARSVRGTIAEVRKQDFMQTLHA
KGLPGRRIFVHVVKNALPAVLAVMGLQLAQLLGGSILVETVFSWPGTGFLLNNAIFTRDLPVLQGTILVLAMFFVLINLA
VDVVQTAVDPRIKRA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=342, Percent_Identity=37.1345029239766, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=37.8125, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1789888, Length=324, Percent_Identity=37.3456790123457, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=35.8433734939759, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=34.3653250773994, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1787550, Length=337, Percent_Identity=28.486646884273, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=26.9230769230769, Blast_Score=119, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35743; Mature: 35743

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRRPARVAAADRKADPMLVYVLRRILYTVPIALGVSLVCFALIHLAPGDPLSAIIPEG
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
ASPETVAQVRAAYGFDRPLPVQYLKWLQHVVMGDFGNSIMTQRPVMAEVLPALANTLMLA
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHH
AAAVLFGFAAGCLLGVVSGYLAGKPTDKAVTAVSITGVSIPHYWLGMVLMVIFAVELNLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
PATGMGEGGSGAFGFGWDSLQYLILPALTLSVIPAGIIARSVRGTIAEVRKQDFMQTLHA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGLPGRRIFVHVVKNALPAVLAVMGLQLAQLLGGSILVETVFSWPGTGFLLNNAIFTRDL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHCCCHHHCCC
PVLQGTILVLAMFFVLINLAVDVVQTAVDPRIKRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MQRRRPARVAAADRKADPMLVYVLRRILYTVPIALGVSLVCFALIHLAPGDPLSAIIPEG
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
ASPETVAQVRAAYGFDRPLPVQYLKWLQHVVMGDFGNSIMTQRPVMAEVLPALANTLMLA
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHH
AAAVLFGFAAGCLLGVVSGYLAGKPTDKAVTAVSITGVSIPHYWLGMVLMVIFAVELNLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
PATGMGEGGSGAFGFGWDSLQYLILPALTLSVIPAGIIARSVRGTIAEVRKQDFMQTLHA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGLPGRRIFVHVVKNALPAVLAVMGLQLAQLLGGSILVETVFSWPGTGFLLNNAIFTRDL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHCCCHHHCCC
PVLQGTILVLAMFFVLINLAVDVVQTAVDPRIKRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]