| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
Click here to switch to the map view.
The map label for this gene is gsiD [H]
Identifier: 158424252
GI number: 158424252
Start: 2963830
End: 2964732
Strand: Direct
Name: gsiD [H]
Synonym: AZC_2628
Alternate gene names: 158424252
Gene position: 2963830-2964732 (Clockwise)
Preceding gene: 158424251
Following gene: 158424253
Centisome position: 55.19
GC content: 67.11
Gene sequence:
>903_bases ATGTCCCAGCCCGCCATCGCCCTCGCCGGCGCCAAGGCCGCCACCAAGGGCAAGCGCCCCGCCACCCGCAGCTTCTGGCG CAATGTCGGCCGTCGCCTGCTGCGCGACCCGGTGAGCATGGTGTGCCTCACCCTCCTGCTGCTGATCGTGCTCGCGGCAA TCTTCGCCCCCTATGTGGCCCCGCACGATCCCTATCGCACCAGCATGGCCCGCCGCCTGATCGCGCCGGGCGATGCGCGC TATTGGCTGGGCACGGACGAGCTCGGCCGCGATCTGCTGTCGCGCCTCATCTATGGCGGCCGACTCTCGCTCTTCATGGG CTTCGCCCCGGTGCTGATTGCCACCGCCATCGGCGGCCTGCTCGGCATCATCGCGGGTTATGTCGGCGGAGCGCTCAACA TGCTGATCATGCGCGTGATCGACGTGTTCTATGCCTTCCCGTCCGTGCTGCTGGCAGTCGCCATCTCCGGGGTGCTCGGG GCAGGCATCGGCAACACCATCTTCTCGTTGACGCTGGTCTTCATTCCGCCCGTTGCCCGCGTGGCCGAAAGCGTGGCGAC CCAGATGCGCAACCAGGATTTCGTCGAGGCCGCCCGCGCCACCGGGGCCGCCAACTGGCGCATCGTCCTCGCCCATGTGG TGCCCAACGTCACGGGCCCCATCCTGAGCTACGCCTCAAGCCTCATCAGCGTCTCCATCGTGCTCGCCGCCGGTCTCTCC TTCCTCGGCCTCGGCATCACGCCGCCGGAGCCGGAATGGGGCCTGATGCTGAACACGCTGCGCCAGTCCATCTATGTGGC GCCGCTCAACGCCATCCTGCCGGGTGTGATGATCTTCATCACCTCCATGTGCTTCAACCTCATGAGCGACGGCCTGCGCA GCGCCATGGACGTGAAGCAGTGA
Upstream 100 bases:
>100_bases CTCGTGCTGGCGATGTTCTTCGTGCTCATCAATCTCGCCGTCGACGTGGTGCAGACCGCCGTCGATCCCCGCATCAAGCG CGCCTGAGGGAGAGCCACCC
Downstream 100 bases:
>100_bases GGGCATCCGCATGACCCCCTCCCCCCTTTCCCCGAAACACGGTGTCGCCATGGCCGCCATTCCCAACGACGTCGATCCGC GCGATCGCGGCGGCCCCGCC
Product: ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSQPAIALAGAKAATKGKRPATRSFWRNVGRRLLRDPVSMVCLTLLLLIVLAAIFAPYVAPHDPYRTSMARRLIAPGDAR YWLGTDELGRDLLSRLIYGGRLSLFMGFAPVLIATAIGGLLGIIAGYVGGALNMLIMRVIDVFYAFPSVLLAVAISGVLG AGIGNTIFSLTLVFIPPVARVAESVATQMRNQDFVEAARATGAANWRIVLAHVVPNVTGPILSYASSLISVSIVLAAGLS FLGLGITPPEPEWGLMLNTLRQSIYVAPLNAILPGVMIFITSMCFNLMSDGLRSAMDVKQ
Sequences:
>Translated_300_residues MSQPAIALAGAKAATKGKRPATRSFWRNVGRRLLRDPVSMVCLTLLLLIVLAAIFAPYVAPHDPYRTSMARRLIAPGDAR YWLGTDELGRDLLSRLIYGGRLSLFMGFAPVLIATAIGGLLGIIAGYVGGALNMLIMRVIDVFYAFPSVLLAVAISGVLG AGIGNTIFSLTLVFIPPVARVAESVATQMRNQDFVEAARATGAANWRIVLAHVVPNVTGPILSYASSLISVSIVLAAGLS FLGLGITPPEPEWGLMLNTLRQSIYVAPLNAILPGVMIFITSMCFNLMSDGLRSAMDVKQ >Mature_299_residues SQPAIALAGAKAATKGKRPATRSFWRNVGRRLLRDPVSMVCLTLLLLIVLAAIFAPYVAPHDPYRTSMARRLIAPGDARY WLGTDELGRDLLSRLIYGGRLSLFMGFAPVLIATAIGGLLGIIAGYVGGALNMLIMRVIDVFYAFPSVLLAVAISGVLGA GIGNTIFSLTLVFIPPVARVAESVATQMRNQDFVEAARATGAANWRIVLAHVVPNVTGPILSYASSLISVSIVLAAGLSF LGLGITPPEPEWGLMLNTLRQSIYVAPLNAILPGVMIFITSMCFNLMSDGLRSAMDVKQ
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1173
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=282, Percent_Identity=40.7801418439716, Blast_Score=224, Evalue=4e-60, Organism=Escherichia coli, GI1787760, Length=289, Percent_Identity=34.9480968858132, Blast_Score=180, Evalue=8e-47, Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=39.2561983471074, Blast_Score=171, Evalue=4e-44, Organism=Escherichia coli, GI1789964, Length=253, Percent_Identity=41.501976284585, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1787549, Length=286, Percent_Identity=33.2167832167832, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1787498, Length=279, Percent_Identity=34.0501792114695, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1788505, Length=234, Percent_Identity=28.2051282051282, Blast_Score=92, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31955; Mature: 31823
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPAIALAGAKAATKGKRPATRSFWRNVGRRLLRDPVSMVCLTLLLLIVLAAIFAPYVA CCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC PHDPYRTSMARRLIAPGDARYWLGTDELGRDLLSRLIYGGRLSLFMGFAPVLIATAIGGL CCCHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LGIIAGYVGGALNMLIMRVIDVFYAFPSVLLAVAISGVLGAGIGNTIFSLTLVFIPPVAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHH VAESVATQMRNQDFVEAARATGAANWRIVLAHVVPNVTGPILSYASSLISVSIVLAAGLS HHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH FLGLGITPPEPEWGLMLNTLRQSIYVAPLNAILPGVMIFITSMCFNLMSDGLRSAMDVKQ HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SQPAIALAGAKAATKGKRPATRSFWRNVGRRLLRDPVSMVCLTLLLLIVLAAIFAPYVA CCCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC PHDPYRTSMARRLIAPGDARYWLGTDELGRDLLSRLIYGGRLSLFMGFAPVLIATAIGGL CCCHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LGIIAGYVGGALNMLIMRVIDVFYAFPSVLLAVAISGVLGAGIGNTIFSLTLVFIPPVAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHH VAESVATQMRNQDFVEAARATGAANWRIVLAHVVPNVTGPILSYASSLISVSIVLAAGLS HHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH FLGLGITPPEPEWGLMLNTLRQSIYVAPLNAILPGVMIFITSMCFNLMSDGLRSAMDVKQ HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]