Click here to switch to the map view.

The map label for this gene is rutC

Identifier: 158424118

GI number: 158424118

Start: 2829328

End: 2829714

Strand: Direct

Name: rutC

Synonym: AZC_2494

Alternate gene names: 158424118

Gene position: 2829328-2829714 (Clockwise)

Preceding gene: 158424117

Following gene: 158424119

Centisome position: 52.69

GC content: 64.86

Gene sequence:

>387_bases
ATGACCTCCCGCGCCATCATTCCCCCCGGCTCCGGCGTGCCGCTGGCGCCCTATTCGCCCGGTATGCAGGCGGACAATGT
GATCTATGTCTCGGGCACCCTGCCCTTCGACAAGGACAACAACGTCGTCCATCTGGGGGACGCTGCGTGCCAGACCCGGC
ATGTGCTGGAGATCATCAAGGGCGTGCTGGAAGCCGCCGGCTCCGGCATGGCGGACGTGACCTTCAACCACATCTTCCTG
ACAGACTGGGCGAATTACGGCGCCATCAACGCCGTCTATGCGGAATATTTCCCCGGCGAGAAGCCCGCGCGCTATTGCGT
GCAGGTGGGCCTCGTGAAGCCCGGCGCGCTGGTGGAGATCGCCACCATCGCCCACAAGCGGGCCTGA

Upstream 100 bases:

>100_bases
CGCCATCTACAATGTGGAGACATTCTTCGGCTGGGTTTCCACCGTCGCCGATTTCCGCCGCGCCTTCGCGCAGATCCCTC
CCAAGGAAGACTGACCGGCC

Downstream 100 bases:

>100_bases
GCCATGGCGATGGCCCCTGCCCGGACCCTGCCTCACCGCGGCGGATGGCGGGTGGCCATGCCCTCCCCCTCCCGCGTCGC
GCTCTACCAGATCGCCCTCC

Product: endoribonuclease L-PSP family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MTSRAIIPPGSGVPLAPYSPGMQADNVIYVSGTLPFDKDNNVVHLGDAACQTRHVLEIIKGVLEAAGSGMADVTFNHIFL
TDWANYGAINAVYAEYFPGEKPARYCVQVGLVKPGALVEIATIAHKRA

Sequences:

>Translated_128_residues
MTSRAIIPPGSGVPLAPYSPGMQADNVIYVSGTLPFDKDNNVVHLGDAACQTRHVLEIIKGVLEAAGSGMADVTFNHIFL
TDWANYGAINAVYAEYFPGEKPARYCVQVGLVKPGALVEIATIAHKRA
>Mature_127_residues
TSRAIIPPGSGVPLAPYSPGMQADNVIYVSGTLPFDKDNNVVHLGDAACQTRHVLEIIKGVLEAAGSGMADVTFNHIFLT
DWANYGAINAVYAEYFPGEKPARYCVQVGLVKPGALVEIATIAHKRA

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Homo sapiens, GI5032215, Length=110, Percent_Identity=29.0909090909091, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=66.4, Blast_Score=177, Evalue=1e-46,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=30.46875, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI87082213, Length=130, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=110, Percent_Identity=36.3636363636364, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=110, Percent_Identity=36.3636363636364, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=110, Percent_Identity=36.3636363636364, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6320899, Length=106, Percent_Identity=39.622641509434, Blast_Score=79, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=32.8, Blast_Score=78, Evalue=5e-16,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=39.5161290322581, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUTC_AZOC5 (A8IAD2)

Other databases:

- EMBL:   AP009384
- RefSeq:   YP_001525410.1
- ProteinModelPortal:   A8IAD2
- SMR:   A8IAD2
- GeneID:   5690526
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_2494
- HOGENOM:   HBG695954
- OMA:   VYAEYFP
- ProtClustDB:   CLSK879923
- BioCyc:   ACAU438753:AZC_2494-MONOMER
- HAMAP:   MF_00831
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR03610

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 13613; Mature: 13482

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS01094 UPF0076

Important sites: ACT_SITE 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRAIIPPGSGVPLAPYSPGMQADNVIYVSGTLPFDKDNNVVHLGDAACQTRHVLEIIK
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHH
GVLEAAGSGMADVTFNHIFLTDWANYGAINAVYAEYFPGEKPARYCVQVGLVKPGALVEI
HHHHHHCCCCCEEEEEEEEEECCCCCCCCEEEHHHHCCCCCCHHEEEEECCCCCCCEEEE
ATIAHKRA
EEHHHCCC
>Mature Secondary Structure 
TSRAIIPPGSGVPLAPYSPGMQADNVIYVSGTLPFDKDNNVVHLGDAACQTRHVLEIIK
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHH
GVLEAAGSGMADVTFNHIFLTDWANYGAINAVYAEYFPGEKPARYCVQVGLVKPGALVEI
HHHHHHCCCCCEEEEEEEEEECCCCCCCCEEEHHHHCCCCCCHHEEEEECCCCCCCEEEE
ATIAHKRA
EEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA