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The map label for this gene is ytlD [H]

Identifier: 158424119

GI number: 158424119

Start: 2829718

End: 2830518

Strand: Direct

Name: ytlD [H]

Synonym: AZC_2495

Alternate gene names: 158424119

Gene position: 2829718-2830518 (Clockwise)

Preceding gene: 158424118

Following gene: 158424120

Centisome position: 52.7

GC content: 69.41

Gene sequence:

>801_bases
ATGGCGATGGCCCCTGCCCGGACCCTGCCTCACCGCGGCGGATGGCGGGTGGCCATGCCCTCCCCCTCCCGCGTCGCGCT
CTACCAGATCGCCCTCCTCCTCGCCCTGCTGGCGCTGTGGGAGGCGGGCGTCGCCCTTGGCTGGCTGCCGGTCTTCCTCT
ATGGCCGCCCGAGCGGCGTCATCGCCAAGGGCTGGCAGCTCATCCTTTCCGGGGAACTTGCCCGTGACGCAGCGCTGACC
GCCTGGGAGGCCATCTCCGGCTTTGCCATCGGCACGGTGCTCGGCAGTGCCGCCGGGCTCACGCTCTGGCTGTTCCCCAC
GGGCGCGGCGGTGCTGCGGCCCTACATGATCGCGCTCAACGGCCTGCCGAAGATCGCGCTCGCCCCGCTCATCATCGTGT
GGTTCGGCATCGGCCTCGGCTCCAAGATCGCCATTGCCGCCATCATCACCTTCATCGTCGCCCTCATCACCGCCCAGCAG
GGCGCGAAAGAGGTGGACGCGGACCTCGTGAAGCTCATGCGCTCGCTGGGCGCCAGCCGCCTGCGCACCTGGCGGACGGT
GATCGTGCCCGGCGCCATGCCGTGGATCGTCTCGGCCTTCCGGCTCAACGTCGGCTTCGCGCTCATCGGCGCCGTGGTGG
GCGAATACATCGCCTCCAAGGAGGGCCTCGGCTACATGATCTACTATGCCGGCGTCCTTTACGACCTCAACGCCGTGTGG
GTGGGCATCGCCGCGCTCATGGGTGTCGCGCTGGCCATGTACGGCGTCATCGACCTGATCGAACGGCGCCTGCGCGCCTG
A

Upstream 100 bases:

>100_bases
CCCCGGCGAGAAGCCCGCGCGCTATTGCGTGCAGGTGGGCCTCGTGAAGCCCGGCGCGCTGGTGGAGATCGCCACCATCG
CCCACAAGCGGGCCTGAGCC

Downstream 100 bases:

>100_bases
CCATCCCAAAATCCCGTTAAAAGCGAAGACGTTCCATGCCCTATGCGCACGGCGGCGACGCCGACCTCTATTATGAAATC
CACGGCGCGGGGACGCCCAT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MAMAPARTLPHRGGWRVAMPSPSRVALYQIALLLALLALWEAGVALGWLPVFLYGRPSGVIAKGWQLILSGELARDAALT
AWEAISGFAIGTVLGSAAGLTLWLFPTGAAVLRPYMIALNGLPKIALAPLIIVWFGIGLGSKIAIAAIITFIVALITAQQ
GAKEVDADLVKLMRSLGASRLRTWRTVIVPGAMPWIVSAFRLNVGFALIGAVVGEYIASKEGLGYMIYYAGVLYDLNAVW
VGIAALMGVALAMYGVIDLIERRLRA

Sequences:

>Translated_266_residues
MAMAPARTLPHRGGWRVAMPSPSRVALYQIALLLALLALWEAGVALGWLPVFLYGRPSGVIAKGWQLILSGELARDAALT
AWEAISGFAIGTVLGSAAGLTLWLFPTGAAVLRPYMIALNGLPKIALAPLIIVWFGIGLGSKIAIAAIITFIVALITAQQ
GAKEVDADLVKLMRSLGASRLRTWRTVIVPGAMPWIVSAFRLNVGFALIGAVVGEYIASKEGLGYMIYYAGVLYDLNAVW
VGIAALMGVALAMYGVIDLIERRLRA
>Mature_265_residues
AMAPARTLPHRGGWRVAMPSPSRVALYQIALLLALLALWEAGVALGWLPVFLYGRPSGVIAKGWQLILSGELARDAALTA
WEAISGFAIGTVLGSAAGLTLWLFPTGAAVLRPYMIALNGLPKIALAPLIIVWFGIGLGSKIAIAAIITFIVALITAQQG
AKEVDADLVKLMRSLGASRLRTWRTVIVPGAMPWIVSAFRLNVGFALIGAVVGEYIASKEGLGYMIYYAGVLYDLNAVWV
GIAALMGVALAMYGVIDLIERRLRA

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=228, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786564, Length=234, Percent_Identity=29.0598290598291, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28268; Mature: 28137

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMAPARTLPHRGGWRVAMPSPSRVALYQIALLLALLALWEAGVALGWLPVFLYGRPSGV
CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
IAKGWQLILSGELARDAALTAWEAISGFAIGTVLGSAAGLTLWLFPTGAAVLRPYMIALN
HHHCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHC
GLPKIALAPLIIVWFGIGLGSKIAIAAIITFIVALITAQQGAKEVDADLVKLMRSLGASR
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHH
LRTWRTVIVPGAMPWIVSAFRLNVGFALIGAVVGEYIASKEGLGYMIYYAGVLYDLNAVW
HHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VGIAALMGVALAMYGVIDLIERRLRA
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AMAPARTLPHRGGWRVAMPSPSRVALYQIALLLALLALWEAGVALGWLPVFLYGRPSGV
CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
IAKGWQLILSGELARDAALTAWEAISGFAIGTVLGSAAGLTLWLFPTGAAVLRPYMIALN
HHHCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHC
GLPKIALAPLIIVWFGIGLGSKIAIAAIITFIVALITAQQGAKEVDADLVKLMRSLGASR
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHH
LRTWRTVIVPGAMPWIVSAFRLNVGFALIGAVVGEYIASKEGLGYMIYYAGVLYDLNAVW
HHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VGIAALMGVALAMYGVIDLIERRLRA
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]