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The map label for this gene is rsmD [H]

Identifier: 158424015

GI number: 158424015

Start: 2717711

End: 2718274

Strand: Direct

Name: rsmD [H]

Synonym: AZC_2391

Alternate gene names: 158424015

Gene position: 2717711-2718274 (Clockwise)

Preceding gene: 158424014

Following gene: 158424020

Centisome position: 50.61

GC content: 70.57

Gene sequence:

>564_bases
ATGCGGATCGTCGGCGGCAAGCATCGCGGGCGCCCTCTTCAGGCGCCCGCTTCCAAGGCGACGCGGCCGACCACGGACCG
GCTGCGCGAGAGCCTCTTCAACATGCTCGCCCATGCCTATGGCGATGCGGCCGACGGCGCGCGGGTGCTGGACCTGTTCG
CCGGCACCGGGGCGCTCGGCATCGAGGCGCTATCACGCGGCGCGGTGTTCGCGCTGTTCGTGGAGGAGGCGGCGGAGGCC
CGCGCCCTCATCCGGGCGAATGTGGACGCGCTGGGCTTGGCCGGTTCCACCAAGATCTTCCGCCGTGATGCGACCGCGCT
GGGCGAGATGGGGCCGGGCGGTCCCTATGATCTCGTCTTCTGCGATCCGCCCTATGGCAAGGGGCTGGCGGAAGCCGCCC
TCGCCTCCGCCCGCGACGGCGGCTGGCTGGCACCCAATGCGCTGCTCATTGTCGAGGAACAGACGGGCGCCTTCACGGTG
CCGGACGGCTTCGAGGAAATCGAGCGCCGGCGCTATGACGACAGCGAACTGACCTTCCTCCAGCCGGTGGCCAGCGCACC
CTGA

Upstream 100 bases:

>100_bases
CGGCCCGCGCACGGGCGCGCCCAAGGGGCGGCCCGGTGGCGGCAAGGGCGGCCCGGCACGCGGCGGCAAGCCGCAAGGTC
CGCGTTCGCGCGGCTGATCC

Downstream 100 bases:

>100_bases
GCTTCACACCCGCTCGGGGTGGCGCTCCACGGTGGGCAGGATCTCCTGCGCCTCGTCGTCCCGGCGCTCCCGCGCGCCCG
GATGCTCCTCGATATGCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRIVGGKHRGRPLQAPASKATRPTTDRLRESLFNMLAHAYGDAADGARVLDLFAGTGALGIEALSRGAVFALFVEEAAEA
RALIRANVDALGLAGSTKIFRRDATALGEMGPGGPYDLVFCDPPYGKGLAEAALASARDGGWLAPNALLIVEEQTGAFTV
PDGFEEIERRRYDDSELTFLQPVASAP

Sequences:

>Translated_187_residues
MRIVGGKHRGRPLQAPASKATRPTTDRLRESLFNMLAHAYGDAADGARVLDLFAGTGALGIEALSRGAVFALFVEEAAEA
RALIRANVDALGLAGSTKIFRRDATALGEMGPGGPYDLVFCDPPYGKGLAEAALASARDGGWLAPNALLIVEEQTGAFTV
PDGFEEIERRRYDDSELTFLQPVASAP
>Mature_187_residues
MRIVGGKHRGRPLQAPASKATRPTTDRLRESLFNMLAHAYGDAADGARVLDLFAGTGALGIEALSRGAVFALFVEEAAEA
RALIRANVDALGLAGSTKIFRRDATALGEMGPGGPYDLVFCDPPYGKGLAEAALASARDGGWLAPNALLIVEEQTGAFTV
PDGFEEIERRRYDDSELTFLQPVASAP

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=167, Percent_Identity=43.7125748502994, Blast_Score=116, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 19759; Mature: 19759

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVGGKHRGRPLQAPASKATRPTTDRLRESLFNMLAHAYGDAADGARVLDLFAGTGALG
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHH
IEALSRGAVFALFVEEAAEARALIRANVDALGLAGSTKIFRRDATALGEMGPGGPYDLVF
HHHHHCCCEEEHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
CDPPYGKGLAEAALASARDGGWLAPNALLIVEEQTGAFTVPDGFEEIERRRYDDSELTFL
ECCCCCCHHHHHHHHHCCCCCEECCCEEEEEECCCCCEECCCCHHHHHHHCCCCCCCEEE
QPVASAP
CCCCCCC
>Mature Secondary Structure
MRIVGGKHRGRPLQAPASKATRPTTDRLRESLFNMLAHAYGDAADGARVLDLFAGTGALG
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHH
IEALSRGAVFALFVEEAAEARALIRANVDALGLAGSTKIFRRDATALGEMGPGGPYDLVF
HHHHHCCCEEEHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
CDPPYGKGLAEAALASARDGGWLAPNALLIVEEQTGAFTVPDGFEEIERRRYDDSELTFL
ECCCCCCHHHHHHHHHCCCCCEECCCEEEEEECCCCCEECCCCHHHHHHHCCCCCCCEEE
QPVASAP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]