| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is ydfG [C]
Identifier: 158423003
GI number: 158423003
Start: 1561327
End: 1562136
Strand: Direct
Name: ydfG [C]
Synonym: AZC_1379
Alternate gene names: 158423003
Gene position: 1561327-1562136 (Clockwise)
Preceding gene: 158423002
Following gene: 158423004
Centisome position: 29.08
GC content: 68.15
Gene sequence:
>810_bases ATGAGCACCAAGGGAACTGCCGTCGTGACCGGCGCCTCCTCCGGCATCGGAGCCATCTATGCGGACCGCCTCGCCCGGCG CGGCTATGATCTCGTGATCGTTGCCCGTAATGCAGAGCGGCTGGAAAAGCAGGCCGAGGCGCTGCGCGCCCGACACGGCG TCGCCGTGCGCACCCTCAGCGCGGATCTCACGGACAAGTCGGGGCTGCGGCAGGTGGAAGACCTGCTGCGGAACGACACG AGCGTCTCGCTGCTCGTCAACAATGCCGGCTTCGGTGGTGCGGGCGAACTGCTGCAATCGGACGTGGACCGCATGGAGGA GATGGTGGACGTCAATGTCACCGCCGTCATGCGCCTCGCCTATGCGGCCGCGCCGGGCTTCGCGGCGCGCGGCGCGGGCG CCATCATCAATATCGCGTCCATCGTGGCCATCGGTCCGGAAATCCTGAACGGCGTCTACGGGGGCACGAAGGCCTTCGTG CTGGCCTTCAGCCAGTCCCTGCACAAGGAACTCTCGCCCAAGGGCGTTCAGGTGCAGGTGGTGCTGCCCGGCGCCACGGC CACCGATTTCTGGGACACGGCCGGCGTGCCGGTGAGCCATCTGCCCACCGAATGGGTGATGACCGCGGAAAACCTCGTGG ACGCGGCCCTTCTGGGCTTTGAGCGGGGTGAGTTCGCCAGCATTCCCTCGCTTCAGGACGGGGCCGAGTGGGAGGCCTAT GAGACCGCGCGTCAGGCGATGCTGCCGCACCTCTCCAGTTCCGCCGTGGCGCCCCGTTACCGGGCGGGTGCCGACGCCGG CGCGCTCTGA
Upstream 100 bases:
>100_bases AAACGAAGGCCTCACCGCGTGCACACCTGAGCACGCGGCAGGGCCGGCTTGACCCATCGCACACCCGCCGGACCCCGGCG GCCATTCAAAGGGACTGACC
Downstream 100 bases:
>100_bases GGGAAACGGGAGGAGCCTGTCATGGATGCGCGCACCCGCCTTTTGCTGGAGGCTCCTCCCGGCCGCACCATCCTGCGTCT GGCCTGGCCCAATGTCCTCG
Product: short-chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MSTKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLSADLTDKSGLRQVEDLLRNDT SVSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLAYAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFV LAFSQSLHKELSPKGVQVQVVLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAY ETARQAMLPHLSSSAVAPRYRAGADAGAL
Sequences:
>Translated_269_residues MSTKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLSADLTDKSGLRQVEDLLRNDT SVSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLAYAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFV LAFSQSLHKELSPKGVQVQVVLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAY ETARQAMLPHLSSSAVAPRYRAGADAGAL >Mature_268_residues STKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLSADLTDKSGLRQVEDLLRNDTS VSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLAYAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFVL AFSQSLHKELSPKGVQVQVVLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAYE TARQAMLPHLSSSAVAPRYRAGADAGAL
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=188, Percent_Identity=33.5106382978723, Blast_Score=110, Evalue=9e-25, Organism=Homo sapiens, GI4557649, Length=186, Percent_Identity=33.8709677419355, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI226371731, Length=187, Percent_Identity=32.0855614973262, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI40254992, Length=195, Percent_Identity=31.2820512820513, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI33667109, Length=227, Percent_Identity=30.3964757709251, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI5031737, Length=186, Percent_Identity=32.7956989247312, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40807363, Length=219, Percent_Identity=30.1369863013699, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=29.2553191489362, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=25.4054054054054, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=30.7262569832402, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=31.8918918918919, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87082160, Length=194, Percent_Identity=31.4432989690722, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786701, Length=201, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87082100, Length=188, Percent_Identity=29.2553191489362, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789208, Length=187, Percent_Identity=30.4812834224599, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790717, Length=185, Percent_Identity=27.027027027027, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17559552, Length=189, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17557668, Length=189, Percent_Identity=32.8042328042328, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25152911, Length=191, Percent_Identity=32.9842931937173, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI71994604, Length=194, Percent_Identity=32.4742268041237, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71994600, Length=200, Percent_Identity=33.5, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI212646214, Length=190, Percent_Identity=29.4736842105263, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560176, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562904, Length=205, Percent_Identity=30.7317073170732, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17563726, Length=199, Percent_Identity=29.6482412060301, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=33.1658291457286, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=30.8457711442786, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17560150, Length=204, Percent_Identity=30.8823529411765, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560676, Length=190, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565030, Length=202, Percent_Identity=32.1782178217822, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17562910, Length=225, Percent_Identity=28, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=32.3383084577114, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538486, Length=206, Percent_Identity=30.0970873786408, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17561402, Length=192, Percent_Identity=28.125, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203117, Length=222, Percent_Identity=27.9279279279279, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562906, Length=207, Percent_Identity=31.8840579710145, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17538480, Length=197, Percent_Identity=28.9340101522843, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193203115, Length=222, Percent_Identity=27.9279279279279, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17531453, Length=207, Percent_Identity=32.3671497584541, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=26.8722466960352, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25147288, Length=184, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17559104, Length=202, Percent_Identity=28.7128712871287, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562908, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562990, Length=200, Percent_Identity=31, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=31.0880829015544, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6322067, Length=197, Percent_Identity=28.4263959390863, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=36.6492146596859, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=35.4166666666667, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI161076933, Length=185, Percent_Identity=34.0540540540541, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI24584748, Length=185, Percent_Identity=34.0540540540541, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI23397609, Length=189, Percent_Identity=34.3915343915344, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24584752, Length=188, Percent_Identity=32.4468085106383, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=31.9148936170213, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=31.9148936170213, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=32.8125, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI116007236, Length=207, Percent_Identity=32.3671497584541, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI116007238, Length=187, Percent_Identity=32.620320855615, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=29.1666666666667, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=31.6831683168317, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI21355319, Length=186, Percent_Identity=28.494623655914, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648944, Length=204, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24643142, Length=218, Percent_Identity=30.2752293577982, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24639444, Length=196, Percent_Identity=30.6122448979592, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24649181, Length=187, Percent_Identity=26.7379679144385, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665247, Length=199, Percent_Identity=29.1457286432161, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI221331216, Length=199, Percent_Identity=29.1457286432161, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28193; Mature: 28062
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLS CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEEE ADLTDKSGLRQVEDLLRNDTSVSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLA CCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH YAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFVLAFSQSLHKELSPKGVQVQV HHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEE VLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAY EECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH ETARQAMLPHLSSSAVAPRYRAGADAGAL HHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure STKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLS CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEEE ADLTDKSGLRQVEDLLRNDTSVSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLA CCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH YAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFVLAFSQSLHKELSPKGVQVQV HHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEE VLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAY EECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH ETARQAMLPHLSSSAVAPRYRAGADAGAL HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12950922 [H]