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The map label for this gene is ccmF [H]

Identifier: 158422758

GI number: 158422758

Start: 1260164

End: 1262149

Strand: Direct

Name: ccmF [H]

Synonym: AZC_1134

Alternate gene names: 158422758

Gene position: 1260164-1262149 (Clockwise)

Preceding gene: 158422757

Following gene: 158422759

Centisome position: 23.47

GC content: 69.89

Gene sequence:

>1986_bases
ATGATCGCGGAACTCGGCCATTACGCCCTCGTCCTCGCGCTCGCTCTGTCGCTGGTGCAGATGGTGGTGCCGGCCTGGGG
CGCGGCGAAGCAGGACCCGGTTCTCATGGGCGTCGCCGGGCCGGTGGCGCTGGCGCTGCTGCTGTTCGTCTCCGCCGCCT
TTGCGGCGCTGGTCGCGGTCTATGTGACCTCCGATTTCTCGGTGGCGAACGTGGTGGAGAATTCCCACTCGCAGATGCCG
CTCGTCTACAAGATCACCAGCACCTGGGGGAACCACGAGGGTTCCATGATGCTCTGGGTGCTCGTGCTGGCGGTGTTCGG
CGCGCTGGTGGCGGTGTTCGGGACCAATCTGCCCGACCGCCTGAAGGCCAATGCGCTGGCCGTGCAGGGCGCCATCGCCA
CAGCCTTCCTCGCCTTCATCCTGCTCACCTCCAATCCCTTCCTGCGCATTCTCCAGCCGCCGGCGGAAGGCCGCAGCCTC
AATCCGGTCCTGCAGGACCCCGGCCTCGCCATCCATCCCCCGCTGCTCTATCTCGGCTATGTGGGCCTCTCCATCGCCTT
CTCCTTCGCCATGGCGGCGCTGATCGAGGGCCGGATCGATGCCGCCTGGGCGCGTTGGGTGCGGCCCTGGACGCTGGCCG
CCTGGGTGTTCCTGACGCTCGGCATCGCCATGGGCTCCTACTGGGCCTATTACGAGCTCGGCTGGGGCGGCTGGTGGTTC
TGGGACCCGGTGGAGAACGCCTCCCTGATGCCCTGGCTCGCCGCCACCGCGCTCCTCCATTCGGCGGTGGTGATGGAAAA
GCGGGACGCGCTGAAGATCTGGACGGTGCTGCTCGCCATCCTCGCCTTCTCGCTGTCGCTGATCGGCACCTTCCTCGTGC
GGTCCGGCGTCCTCACCTCGGTCCACGCCTTCGCCACCGATCCGGCGCGCGGCGTCTTCATCCTCGGCATTCTCACCGTC
TTCATCGGCGGCAGCCTGCTGCTGTTCGCGCTGCGGGCCGGAGAGTTGCGGCAGGGCGGCCTGTTCGCGCCCGTCTCCCG
CGAGGGGGCGCTGGTGATGAACAATCTGTTCCTCACCGCCGCCACCGCCTCGGTCTTCGTCGGCACGCTTTATCCGCTGG
CGCTGGAGGCCTTCACGGACAGCAAGATCACGGTGGGCCCGCCCTTCTTCAATCTCACCTTCGGCGGGCTGATGCTGCCG
CTGGTCTTCGCCATTCCGTTCGGCCCGCTGCTGGCCTGGAAGCGCGGCGACCTGCTGGGCGTCGCCCAGCGCCTCACCCT
TGCCGCTGGCCTTGCGGTGGTGGCCATCGTCGTTACGGCGGCAGCCGCTGGCGGGGGACCGATCACGCCGGCCATCCTCA
TCGGCCTCGGCGTCTTCATCATCGCCGGCGCGTTGACCGAGCTGGCCGAGCGGGCCGGCGTCGGCCGGGTGCCGGCGCGG
GTCGCCTGGGCGCGCTTCCGGGGCGTGCCGCTCTCGGCGCTGGGGACCGCCGTGGCCCATCTCGGGGTCGGCGTCTGTCT
CATCGGCATCGTCTCGGAGAGCGCCTGGAGCCTGGAGCGCATCGCCTCCATGAAGGTGGGCGATACGGTCACCATCGGCA
CCCGCAGCCTGACGCTGGACCGCCTGGAGAACCGCTCCGGCCCCAATTATGCGGCGCGTGTGGCGGTGTTCGACATCCGC
TCCGGCGGCACGCCGGCCGGCACCGTGGAGACCTCCAGGCGCAGCTTCGAGGCGCGGGCCATGGCCACCACCGAATCCGG
CATCCGCACCTATGGCTTCAGCCAGCTCTACGTTTCCATGGGCGAGGAAACGCCGGACGGCCATCTCTCCATCCGCGCCA
CGTGGAAGCCGCTCGTCACGCTCATCTGGCTCGGCGCCGTGGTGATGGCGCTGGGCGGAGGCCTGTCGCTGGCCGACCGG
CGCCTGCGCGTCGGCGCGCCGCGTCCCGCCCGCCGCCGGACCCCGGCTGCGGTTCCGGCGGAGTAG

Upstream 100 bases:

>100_bases
AGGAAGGCGAGGAGGGCGGCCCCGTGCCGCCAGCCGCCAAGACGCCCGGTCCCCAGTCCTCCGCCGCCCCGCCCGCCGTC
TCTCCTGCCCGGAGCACCCC

Downstream 100 bases:

>100_bases
GGCCATGACGCGCGTGATCCGCCTTCTTGCGGCGCTGTTCCTCACCTTCAGCGTCCTGCCGGCGCTGGCCGTCCAGCCGG
ATGAGGTGCTGCCCGATCCG

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 661; Mature: 661

Protein sequence:

>661_residues
MIAELGHYALVLALALSLVQMVVPAWGAAKQDPVLMGVAGPVALALLLFVSAAFAALVAVYVTSDFSVANVVENSHSQMP
LVYKITSTWGNHEGSMMLWVLVLAVFGALVAVFGTNLPDRLKANALAVQGAIATAFLAFILLTSNPFLRILQPPAEGRSL
NPVLQDPGLAIHPPLLYLGYVGLSIAFSFAMAALIEGRIDAAWARWVRPWTLAAWVFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAATALLHSAVVMEKRDALKIWTVLLAILAFSLSLIGTFLVRSGVLTSVHAFATDPARGVFILGILTV
FIGGSLLLFALRAGELRQGGLFAPVSREGALVMNNLFLTAATASVFVGTLYPLALEAFTDSKITVGPPFFNLTFGGLMLP
LVFAIPFGPLLAWKRGDLLGVAQRLTLAAGLAVVAIVVTAAAAGGGPITPAILIGLGVFIIAGALTELAERAGVGRVPAR
VAWARFRGVPLSALGTAVAHLGVGVCLIGIVSESAWSLERIASMKVGDTVTIGTRSLTLDRLENRSGPNYAARVAVFDIR
SGGTPAGTVETSRRSFEARAMATTESGIRTYGFSQLYVSMGEETPDGHLSIRATWKPLVTLIWLGAVVMALGGGLSLADR
RLRVGAPRPARRRTPAAVPAE

Sequences:

>Translated_661_residues
MIAELGHYALVLALALSLVQMVVPAWGAAKQDPVLMGVAGPVALALLLFVSAAFAALVAVYVTSDFSVANVVENSHSQMP
LVYKITSTWGNHEGSMMLWVLVLAVFGALVAVFGTNLPDRLKANALAVQGAIATAFLAFILLTSNPFLRILQPPAEGRSL
NPVLQDPGLAIHPPLLYLGYVGLSIAFSFAMAALIEGRIDAAWARWVRPWTLAAWVFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAATALLHSAVVMEKRDALKIWTVLLAILAFSLSLIGTFLVRSGVLTSVHAFATDPARGVFILGILTV
FIGGSLLLFALRAGELRQGGLFAPVSREGALVMNNLFLTAATASVFVGTLYPLALEAFTDSKITVGPPFFNLTFGGLMLP
LVFAIPFGPLLAWKRGDLLGVAQRLTLAAGLAVVAIVVTAAAAGGGPITPAILIGLGVFIIAGALTELAERAGVGRVPAR
VAWARFRGVPLSALGTAVAHLGVGVCLIGIVSESAWSLERIASMKVGDTVTIGTRSLTLDRLENRSGPNYAARVAVFDIR
SGGTPAGTVETSRRSFEARAMATTESGIRTYGFSQLYVSMGEETPDGHLSIRATWKPLVTLIWLGAVVMALGGGLSLADR
RLRVGAPRPARRRTPAAVPAE
>Mature_661_residues
MIAELGHYALVLALALSLVQMVVPAWGAAKQDPVLMGVAGPVALALLLFVSAAFAALVAVYVTSDFSVANVVENSHSQMP
LVYKITSTWGNHEGSMMLWVLVLAVFGALVAVFGTNLPDRLKANALAVQGAIATAFLAFILLTSNPFLRILQPPAEGRSL
NPVLQDPGLAIHPPLLYLGYVGLSIAFSFAMAALIEGRIDAAWARWVRPWTLAAWVFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAATALLHSAVVMEKRDALKIWTVLLAILAFSLSLIGTFLVRSGVLTSVHAFATDPARGVFILGILTV
FIGGSLLLFALRAGELRQGGLFAPVSREGALVMNNLFLTAATASVFVGTLYPLALEAFTDSKITVGPPFFNLTFGGLMLP
LVFAIPFGPLLAWKRGDLLGVAQRLTLAAGLAVVAIVVTAAAAGGGPITPAILIGLGVFIIAGALTELAERAGVGRVPAR
VAWARFRGVPLSALGTAVAHLGVGVCLIGIVSESAWSLERIASMKVGDTVTIGTRSLTLDRLENRSGPNYAARVAVFDIR
SGGTPAGTVETSRRSFEARAMATTESGIRTYGFSQLYVSMGEETPDGHLSIRATWKPLVTLIWLGAVVMALGGGLSLADR
RLRVGAPRPARRRTPAAVPAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=664, Percent_Identity=43.9759036144578, Blast_Score=508, Evalue=1e-145,
Organism=Escherichia coli, GI1790511, Length=583, Percent_Identity=37.0497427101201, Blast_Score=288, Evalue=9e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 69871; Mature: 69871

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAELGHYALVLALALSLVQMVVPAWGAAKQDPVLMGVAGPVALALLLFVSAAFAALVAV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
YVTSDFSVANVVENSHSQMPLVYKITSTWGNHEGSMMLWVLVLAVFGALVAVFGTNLPDR
HHCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LKANALAVQGAIATAFLAFILLTSNPFLRILQPPAEGRSLNPVLQDPGLAIHPPLLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHCCCCCEECCHHHHHHH
VGLSIAFSFAMAALIEGRIDAAWARWVRPWTLAAWVFLTLGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
WDPVENASLMPWLAATALLHSAVVMEKRDALKIWTVLLAILAFSLSLIGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFATDPARGVFILGILTVFIGGSLLLFALRAGELRQGGLFAPVSREGALVMNNLFLTA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEHHHHHHH
ATASVFVGTLYPLALEAFTDSKITVGPPFFNLTFGGLMLPLVFAIPFGPLLAWKRGDLLG
HHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHH
VAQRLTLAAGLAVVAIVVTAAAAGGGPITPAILIGLGVFIIAGALTELAERAGVGRVPAR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VAWARFRGVPLSALGTAVAHLGVGVCLIGIVSESAWSLERIASMKVGDTVTIGTRSLTLD
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCEEHH
RLENRSGPNYAARVAVFDIRSGGTPAGTVETSRRSFEARAMATTESGIRTYGFSQLYVSM
HHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHCC
GEETPDGHLSIRATWKPLVTLIWLGAVVMALGGGLSLADRRLRVGAPRPARRRTPAAVPA
CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCHHHCCHHCCCCCCCCCCCCCCCCCC
E
C
>Mature Secondary Structure
MIAELGHYALVLALALSLVQMVVPAWGAAKQDPVLMGVAGPVALALLLFVSAAFAALVAV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
YVTSDFSVANVVENSHSQMPLVYKITSTWGNHEGSMMLWVLVLAVFGALVAVFGTNLPDR
HHCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LKANALAVQGAIATAFLAFILLTSNPFLRILQPPAEGRSLNPVLQDPGLAIHPPLLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHCCCCCEECCHHHHHHH
VGLSIAFSFAMAALIEGRIDAAWARWVRPWTLAAWVFLTLGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
WDPVENASLMPWLAATALLHSAVVMEKRDALKIWTVLLAILAFSLSLIGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFATDPARGVFILGILTVFIGGSLLLFALRAGELRQGGLFAPVSREGALVMNNLFLTA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEHHHHHHH
ATASVFVGTLYPLALEAFTDSKITVGPPFFNLTFGGLMLPLVFAIPFGPLLAWKRGDLLG
HHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHH
VAQRLTLAAGLAVVAIVVTAAAAGGGPITPAILIGLGVFIIAGALTELAERAGVGRVPAR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VAWARFRGVPLSALGTAVAHLGVGVCLIGIVSESAWSLERIASMKVGDTVTIGTRSLTLD
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCEEHH
RLENRSGPNYAARVAVFDIRSGGTPAGTVETSRRSFEARAMATTESGIRTYGFSQLYVSM
HHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHCC
GEETPDGHLSIRATWKPLVTLIWLGAVVMALGGGLSLADRRLRVGAPRPARRRTPAAVPA
CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCHHHCCHHCCCCCCCCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]