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The map label for this gene is cycL [H]

Identifier: 158422759

GI number: 158422759

Start: 1262154

End: 1262639

Strand: Direct

Name: cycL [H]

Synonym: AZC_1135

Alternate gene names: 158422759

Gene position: 1262154-1262639 (Clockwise)

Preceding gene: 158422758

Following gene: 158422760

Centisome position: 23.5

GC content: 70.37

Gene sequence:

>486_bases
ATGACGCGCGTGATCCGCCTTCTTGCGGCGCTGTTCCTCACCTTCAGCGTCCTGCCGGCGCTGGCCGTCCAGCCGGATGA
GGTGCTGCCCGATCCGGCAATGGAAGCGCGGGCGCGCGAGCTCTCCAAGGAGCTGCGCTGCATGGTCTGCCAGAACCAGT
CCATCGACGATTCCGATGCGCAGCTCGCCCGCGACCTGCGCATCCTCGTACGCGAGCGGCTGAAGGCGGGTGACAGCAAC
AGCCAGGTGCTGGATTTCCTCGTCGCCCGCTATGGCGAGTTCGTGCTGATGCGCCCGGTCTTCTCCTGGCGCAACGCCCT
GCTCTGGGGCACGCCCGGCCTCGTCCTGGTGCTCGGCGCCTGCGCCGCCTTCTTCGCCCTGCGCCGCCGGCCGACGTCCG
CGAGCCAGGCCCTGACGCCCGAGGAGGAAGCACGCGTGAAGGCGCTGCTCGCGGCCTCCGAGGAGCCCGGCACGCGGCCG
GAATAG

Upstream 100 bases:

>100_bases
CTGGGCGGAGGCCTGTCGCTGGCCGACCGGCGCCTGCGCGTCGGCGCGCCGCGTCCCGCCCGCCGCCGGACCCCGGCTGC
GGTTCCGGCGGAGTAGGGCC

Downstream 100 bases:

>100_bases
TCGGGCTGCGCCCTCACGGAGCCGTGACGCGTCTTACAGAACCGTAATCTTTCAGCCAGCGGACCGTAAGGCGCGCGGGC
CTAGGTTCTCTCTCACGCCC

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTRVIRLLAALFLTFSVLPALAVQPDEVLPDPAMEARARELSKELRCMVCQNQSIDDSDAQLARDLRILVRERLKAGDSN
SQVLDFLVARYGEFVLMRPVFSWRNALLWGTPGLVLVLGACAAFFALRRRPTSASQALTPEEEARVKALLAASEEPGTRP
E

Sequences:

>Translated_161_residues
MTRVIRLLAALFLTFSVLPALAVQPDEVLPDPAMEARARELSKELRCMVCQNQSIDDSDAQLARDLRILVRERLKAGDSN
SQVLDFLVARYGEFVLMRPVFSWRNALLWGTPGLVLVLGACAAFFALRRRPTSASQALTPEEEARVKALLAASEEPGTRP
E
>Mature_160_residues
TRVIRLLAALFLTFSVLPALAVQPDEVLPDPAMEARARELSKELRCMVCQNQSIDDSDAQLARDLRILVRERLKAGDSNS
QVLDFLVARYGEFVLMRPVFSWRNALLWGTPGLVLVLGACAAFFALRRRPTSASQALTPEEEARVKALLAASEEPGTRPE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=118, Percent_Identity=38.9830508474576, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17851; Mature: 17720

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRVIRLLAALFLTFSVLPALAVQPDEVLPDPAMEARARELSKELRCMVCQNQSIDDSDA
CHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
QLARDLRILVRERLKAGDSNSQVLDFLVARYGEFVLMRPVFSWRNALLWGTPGLVLVLGA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
CAAFFALRRRPTSASQALTPEEEARVKALLAASEEPGTRPE
HHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TRVIRLLAALFLTFSVLPALAVQPDEVLPDPAMEARARELSKELRCMVCQNQSIDDSDA
HHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
QLARDLRILVRERLKAGDSNSQVLDFLVARYGEFVLMRPVFSWRNALLWGTPGLVLVLGA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
CAAFFALRRRPTSASQALTPEEEARVKALLAASEEPGTRPE
HHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]