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The map label for this gene is ydaM [H]

Identifier: 158422622

GI number: 158422622

Start: 1115803

End: 1116921

Strand: Reverse

Name: ydaM [H]

Synonym: AZC_0998

Alternate gene names: 158422622

Gene position: 1116921-1115803 (Counterclockwise)

Preceding gene: 158422625

Following gene: 158422617

Centisome position: 20.8

GC content: 65.5

Gene sequence:

>1119_bases
GTGGCGCTTTTGATATCGCCCGGCGGGGGGCGTGGGGACATGATCGTAAGCAGGCTCGACGAGTATCGAAGGCGCATCTG
CCGCGTCCTCGTGGCCATGGCCAGTCTGTGCGTGGTCGGCCTGTGGGTGTTCGAGACCGAAACCCAGGTCATCACGGAAC
TCGACCGGATCGCCTACCCGCTCCTGCTCGCCGCCTTCGTCGTCAGCCTGTTCCTCATGCTGGCGCTGCCGCGCTGGCAC
CGGATGGCGGAGTGGATCGCCTATCTGAGCTTCACGACCTATTGCCTGGTCGGCGTCGCCGCCTTCGGCCATCTGGCGGA
ACAGACTCGTCTCTATACCATCGCCAATACGCTGCAATGGATGCCCATGCTCTATGTGGCGTCCTTCATCCTCCTGCAGC
GGCGGGATGCGGTCATTGCGGCCGCCCTCGTGTTCCTGAGCATGAGCATTCCCATCGTCGTGGAATTCTCCGCTTCCGAT
TCCTACCTGAAGGACCGGGTGCTGGGATCGCTGGTGATCAATGCGTATCTCGTCCACCTCGTGATCCTGGTGTCCCTGTC
GCTGTTCGTGATGACGAGCCTCGCCTTCGAGCAGGCCCGCGCCAAGGCCAAGGCGCTGGAGACGATGGCCTCCACCGATT
CCCTCACCGGCACCATGAACCGCCGCGGCCTCGAGCAGATCCTGCGGCACGTGGCGGGGGGATCGTCGGGTGAGATCGGG
CTCATCCTGATCGACATCGACAACTTCAAGCCGATCAACGACACCTATGGCCACCTCGCCGGGGATGCGGTGCTCCAGGC
GGTCGCCAAGCGCCTGGCGGGCGTGGTGCGCGACAGCGATGTGGTGGGGCGCTGGGGCGGCGACGAATTCCTCATCATCA
CCCGCGATGCGCAGCTTACCGACGTGATCGCCATGGCCGACCGCGCGCGCCAGCACGTTGGCACGCATGTGCTGGCCGGA
ATGCGGGTGACCTTGAGCGCCGGCGTCGGCGTATGGGATGGGCAAGGCCCGTGGGCCGATGCCCTGCAACGGATCGACCG
CGCGCTCTACAGCGCCAAGGCGGAAGGCCGGAACCGCACCGCCGAAGCAGCCACGGCACCGAACCCGATCCCTGCCTGA

Upstream 100 bases:

>100_bases
GACTGCATGCGCCGCTTGTGCCGCCGAACGCCGCCCCTGTCCACCCGGCGCACGTTCCTGCTTACCGCTTTTCGTGGACC
TTGCGGCAAAAGTCTGCCAT

Downstream 100 bases:

>100_bases
GGCCGTCAGAGAGCCGGGGCGCCGGAGGCTTCCAGAACGTCCTCGAACGAGCGCAGACCGGCCCGCGGGGCGTTCACCAG
CACCGACATGTTGCCGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MALLISPGGGRGDMIVSRLDEYRRRICRVLVAMASLCVVGLWVFETETQVITELDRIAYPLLLAAFVVSLFLMLALPRWH
RMAEWIAYLSFTTYCLVGVAAFGHLAEQTRLYTIANTLQWMPMLYVASFILLQRRDAVIAAALVFLSMSIPIVVEFSASD
SYLKDRVLGSLVINAYLVHLVILVSLSLFVMTSLAFEQARAKAKALETMASTDSLTGTMNRRGLEQILRHVAGGSSGEIG
LILIDIDNFKPINDTYGHLAGDAVLQAVAKRLAGVVRDSDVVGRWGGDEFLIITRDAQLTDVIAMADRARQHVGTHVLAG
MRVTLSAGVGVWDGQGPWADALQRIDRALYSAKAEGRNRTAEAATAPNPIPA

Sequences:

>Translated_372_residues
MALLISPGGGRGDMIVSRLDEYRRRICRVLVAMASLCVVGLWVFETETQVITELDRIAYPLLLAAFVVSLFLMLALPRWH
RMAEWIAYLSFTTYCLVGVAAFGHLAEQTRLYTIANTLQWMPMLYVASFILLQRRDAVIAAALVFLSMSIPIVVEFSASD
SYLKDRVLGSLVINAYLVHLVILVSLSLFVMTSLAFEQARAKAKALETMASTDSLTGTMNRRGLEQILRHVAGGSSGEIG
LILIDIDNFKPINDTYGHLAGDAVLQAVAKRLAGVVRDSDVVGRWGGDEFLIITRDAQLTDVIAMADRARQHVGTHVLAG
MRVTLSAGVGVWDGQGPWADALQRIDRALYSAKAEGRNRTAEAATAPNPIPA
>Mature_371_residues
ALLISPGGGRGDMIVSRLDEYRRRICRVLVAMASLCVVGLWVFETETQVITELDRIAYPLLLAAFVVSLFLMLALPRWHR
MAEWIAYLSFTTYCLVGVAAFGHLAEQTRLYTIANTLQWMPMLYVASFILLQRRDAVIAAALVFLSMSIPIVVEFSASDS
YLKDRVLGSLVINAYLVHLVILVSLSLFVMTSLAFEQARAKAKALETMASTDSLTGTMNRRGLEQILRHVAGGSSGEIGL
ILIDIDNFKPINDTYGHLAGDAVLQAVAKRLAGVVRDSDVVGRWGGDEFLIITRDAQLTDVIAMADRARQHVGTHVLAGM
RVTLSAGVGVWDGQGPWADALQRIDRALYSAKAEGRNRTAEAATAPNPIPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=39.0532544378698, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1786584, Length=251, Percent_Identity=33.0677290836653, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI145693134, Length=155, Percent_Identity=36.7741935483871, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=38.0368098159509, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=30.939226519337, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=32.5301204819277, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=33.1491712707182, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=29.8780487804878, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=33.5294117647059, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=35.7575757575758, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787056, Length=304, Percent_Identity=25.3289473684211, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081974, Length=154, Percent_Identity=32.4675324675325, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=31.2883435582822, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 40633; Mature: 40502

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLISPGGGRGDMIVSRLDEYRRRICRVLVAMASLCVVGLWVFETETQVITELDRIAYP
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LLLAAFVVSLFLMLALPRWHRMAEWIAYLSFTTYCLVGVAAFGHLAEQTRLYTIANTLQW
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPMLYVASFILLQRRDAVIAAALVFLSMSIPIVVEFSASDSYLKDRVLGSLVINAYLVHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
VILVSLSLFVMTSLAFEQARAKAKALETMASTDSLTGTMNRRGLEQILRHVAGGSSGEIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
LILIDIDNFKPINDTYGHLAGDAVLQAVAKRLAGVVRDSDVVGRWGGDEFLIITRDAQLT
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHH
DVIAMADRARQHVGTHVLAGMRVTLSAGVGVWDGQGPWADALQRIDRALYSAKAEGRNRT
HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
AEAATAPNPIPA
CCCCCCCCCCCC
>Mature Secondary Structure 
ALLISPGGGRGDMIVSRLDEYRRRICRVLVAMASLCVVGLWVFETETQVITELDRIAYP
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LLLAAFVVSLFLMLALPRWHRMAEWIAYLSFTTYCLVGVAAFGHLAEQTRLYTIANTLQW
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPMLYVASFILLQRRDAVIAAALVFLSMSIPIVVEFSASDSYLKDRVLGSLVINAYLVHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
VILVSLSLFVMTSLAFEQARAKAKALETMASTDSLTGTMNRRGLEQILRHVAGGSSGEIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
LILIDIDNFKPINDTYGHLAGDAVLQAVAKRLAGVVRDSDVVGRWGGDEFLIITRDAQLT
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHH
DVIAMADRARQHVGTHVLAGMRVTLSAGVGVWDGQGPWADALQRIDRALYSAKAEGRNRT
HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
AEAATAPNPIPA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]