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The map label for this gene is ykfC [H]

Identifier: 158421903

GI number: 158421903

Start: 325297

End: 326151

Strand: Reverse

Name: ykfC [H]

Synonym: AZC_0279

Alternate gene names: 158421903

Gene position: 326151-325297 (Counterclockwise)

Preceding gene: 158421904

Following gene: 158421901

Centisome position: 6.07

GC content: 72.05

Gene sequence:

>855_bases
ATGGCTGAGCTGGACCGCCGCCTCACCCCCGCGCGGCCGGACCTTGCCGCATCGAGTCTCAAGGGCGTGGTGGATGCCTC
GCGCTTTGTGGAGGGCGAGGTGCGCCGTGTGTTTGCCGACGTGGCGCCCCTGCGCCGCGCCCCGCGCCCGGACGCCATGC
TCGATACCGAGGCGCTCTATGGCGAGACCGTTACGGCGTTCGAGGACGACATGGAGGGCTGGTCCTGGGTCCAGCTCGGC
CGCGACGGCTACGTGGGCTATATGCCCACCATCGCCATCGGCCCGCTCGGCCCCGCGCCCACGCATCGGGTGAGCGCGCC
GCGCACCTTCCTGTTCCCCGGCCTCGACATCAAGCTGCCGCCGGTGGCGACGCTCGTCACCGGCGCACTGCTCCATGTGC
GGGACGTGCGCGGAAAATTTGCCGTGACCGACCGCGGTGCCGTGCCCGCGCGCCATATCCTGCCCCTTGATGCTGCCGAG
CCGGATTTCGTCACCGTGGCCGCCGGCCTCCTCGGCACGCCCTATCTGTGGGGCGGCTGCTCCAGCCTCGGCATCGACTG
CTCCGGGCTCGTGCAGACGTCGCTCGGCATCGCCGGGATCTCGGCCCCCCGCGACAGCGACATGCAGGAGGCCGCCCTCG
GCGCCAGCATCGACCTGTCCGGCCCGTTCCGGCGCGGCGACCTGCTGTTCTGGCCGGGGCATGTGGGCATCGTGGAGGAC
GCGGTGACCCTGCTCCACGCCAATGCCTTCCACATGGCGGTGGCCCGCGAGCCGCTTGGCCCGGCGCTTCTCCGCATCGC
AGAAGCGGCCGGACCGCTGCGGACGGTGCGGCGGCTCGAGAACGGCGTCGGCTGA

Upstream 100 bases:

>100_bases
CTCGACATCTATGCCTGGAACCCCTCCACCCGCCCCGGCCGGCCGGAAGGCGGCGAGGCGCAGACCATCCGCGCCCTCGA
TGCGCTGCTGACCGAACGCT

Downstream 100 bases:

>100_bases
ACGCCCTATAGGGCGCTTCCCGCCTCAGCGCTTGCGGGCGCCCTCCGAGACGGCGCTCGCCGCCATCACCACCCGGTTGC
GGCCGGCGGCCTTGGCCTCA

Product: cell wall-associated hydrolase

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MAELDRRLTPARPDLAASSLKGVVDASRFVEGEVRRVFADVAPLRRAPRPDAMLDTEALYGETVTAFEDDMEGWSWVQLG
RDGYVGYMPTIAIGPLGPAPTHRVSAPRTFLFPGLDIKLPPVATLVTGALLHVRDVRGKFAVTDRGAVPARHILPLDAAE
PDFVTVAAGLLGTPYLWGGCSSLGIDCSGLVQTSLGIAGISAPRDSDMQEAALGASIDLSGPFRRGDLLFWPGHVGIVED
AVTLLHANAFHMAVAREPLGPALLRIAEAAGPLRTVRRLENGVG

Sequences:

>Translated_284_residues
MAELDRRLTPARPDLAASSLKGVVDASRFVEGEVRRVFADVAPLRRAPRPDAMLDTEALYGETVTAFEDDMEGWSWVQLG
RDGYVGYMPTIAIGPLGPAPTHRVSAPRTFLFPGLDIKLPPVATLVTGALLHVRDVRGKFAVTDRGAVPARHILPLDAAE
PDFVTVAAGLLGTPYLWGGCSSLGIDCSGLVQTSLGIAGISAPRDSDMQEAALGASIDLSGPFRRGDLLFWPGHVGIVED
AVTLLHANAFHMAVAREPLGPALLRIAEAAGPLRTVRRLENGVG
>Mature_283_residues
AELDRRLTPARPDLAASSLKGVVDASRFVEGEVRRVFADVAPLRRAPRPDAMLDTEALYGETVTAFEDDMEGWSWVQLGR
DGYVGYMPTIAIGPLGPAPTHRVSAPRTFLFPGLDIKLPPVATLVTGALLHVRDVRGKFAVTDRGAVPARHILPLDAAEP
DFVTVAAGLLGTPYLWGGCSSLGIDCSGLVQTSLGIAGISAPRDSDMQEAALGASIDLSGPFRRGDLLFWPGHVGIVEDA
VTLLHANAFHMAVAREPLGPALLRIAEAAGPLRTVRRLENGVG

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30111; Mature: 29980

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELDRRLTPARPDLAASSLKGVVDASRFVEGEVRRVFADVAPLRRAPRPDAMLDTEALY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
GETVTAFEDDMEGWSWVQLGRDGYVGYMPTIAIGPLGPAPTHRVSAPRTFLFPGLDIKLP
CCCHHHHHHCCCCCEEEEECCCCCCEECCEEEECCCCCCCCCCCCCCCEEECCCCCEECC
PVATLVTGALLHVRDVRGKFAVTDRGAVPARHILPLDAAEPDFVTVAAGLLGTPYLWGGC
CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHEEECCCCCCCHHHHHHHHHCCCCHHCCC
SSLGIDCSGLVQTSLGIAGISAPRDSDMQEAALGASIDLSGPFRRGDLLFWPGHVGIVED
CCCCCCHHHHHHHHCCEEECCCCCCCCHHHHHCCCEEECCCCCCCCCEEEECCCCCHHHH
AVTLLHANAFHMAVAREPLGPALLRIAEAAGPLRTVRRLENGVG
HHHHHHCCHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AELDRRLTPARPDLAASSLKGVVDASRFVEGEVRRVFADVAPLRRAPRPDAMLDTEALY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
GETVTAFEDDMEGWSWVQLGRDGYVGYMPTIAIGPLGPAPTHRVSAPRTFLFPGLDIKLP
CCCHHHHHHCCCCCEEEEECCCCCCEECCEEEECCCCCCCCCCCCCCCEEECCCCCEECC
PVATLVTGALLHVRDVRGKFAVTDRGAVPARHILPLDAAEPDFVTVAAGLLGTPYLWGGC
CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHEEECCCCCCCHHHHHHHHHCCCCHHCCC
SSLGIDCSGLVQTSLGIAGISAPRDSDMQEAALGASIDLSGPFRRGDLLFWPGHVGIVED
CCCCCCHHHHHHHHCCEEECCCCCCCCHHHHHCCCEEECCCCCCCCCEEEECCCCCHHHH
AVTLLHANAFHMAVAREPLGPALLRIAEAAGPLRTVRRLENGVG
HHHHHHCCHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]