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The map label for this gene is yggS [C]

Identifier: 158421901

GI number: 158421901

Start: 322773

End: 323489

Strand: Reverse

Name: yggS [C]

Synonym: AZC_0277

Alternate gene names: 158421901

Gene position: 323489-322773 (Counterclockwise)

Preceding gene: 158421903

Following gene: 158421900

Centisome position: 6.02

GC content: 68.76

Gene sequence:

>717_bases
ATGAACAGAAGCGGTGCGAATGCACAATCAGCTTCGATCACGCACAGCGAGGCGCCCGCCCGGCTCGCCGGCATACAGTC
CGCCATCGAACAGGCCTGCCGCGACGCGAACCGCGCACGCGAGGCCGTCACTCTCATAGCGGTCTCCAAAACGTTTGGCG
CCGCAGAAATCTGGCCCGTTATCGCCGCCGGCCAGCGGGTGTTCGGCGAGAACCGGGTGCAGGAGAGCCAGGCCAAGTGG
CCGGAGCTGCGCGCCCGGCAGGCCGGCCTCGAGCTCCATCTCATCGGGCCGCTGCAATCCAACAAAGCGGCGGACGCGGT
GGCCCTGTTCGACGTTATCCACACCGTGGACCGGCCCAAGATCGCCTATGCCCTGGCCGAGGAAATGTCCCGCCAGGGCC
GGCGCCTGCCGGTCTTCATCCAGGTGAACACGGGTGCCGAGCCGCAGAAGGCGGGCATCCTGCCGGAAGCGGCCGACGCC
TTCATCGCCGAATGCCGCGACAAGGCGGGGCTCGATGTCCGCGGCCTCATGTGCATTCCGCCAGCGGAAGACGTGCCCGC
GCCGCATTTCGCCCTGCTGGCGGAAATCGCCCGCCACAACGACCTGCCCGGCCTTTCCATGGGCATGAGCGCGGATTTCG
AGGTGGCCATCCACCAGGGCGCCACCCATGTGCGGGTGGGCAGCGCGCTGTTCGGCAGCCGCCCGCGCCCGGCCTGA

Upstream 100 bases:

>100_bases
CCGATCGTTGCCACGCCAACGCAAAAGCTGCGGTTCTCCTTCCGTCCCGCCCGATCTCAGTGCAAAAGGGGGATCGATTG
CAACGTATAAGGAGGCGGTG

Downstream 100 bases:

>100_bases
CGCCCGCCCCTGTGGCTGGCCCCGGACAGGGCGTCATCCACAGGCCGTGCAAGATGTCACCCGACAGGGCTTGATGCGCC
GCCGGGTTGCGGATATGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MNRSGANAQSASITHSEAPARLAGIQSAIEQACRDANRAREAVTLIAVSKTFGAAEIWPVIAAGQRVFGENRVQESQAKW
PELRARQAGLELHLIGPLQSNKAADAVALFDVIHTVDRPKIAYALAEEMSRQGRRLPVFIQVNTGAEPQKAGILPEAADA
FIAECRDKAGLDVRGLMCIPPAEDVPAPHFALLAEIARHNDLPGLSMGMSADFEVAIHQGATHVRVGSALFGSRPRPA

Sequences:

>Translated_238_residues
MNRSGANAQSASITHSEAPARLAGIQSAIEQACRDANRAREAVTLIAVSKTFGAAEIWPVIAAGQRVFGENRVQESQAKW
PELRARQAGLELHLIGPLQSNKAADAVALFDVIHTVDRPKIAYALAEEMSRQGRRLPVFIQVNTGAEPQKAGILPEAADA
FIAECRDKAGLDVRGLMCIPPAEDVPAPHFALLAEIARHNDLPGLSMGMSADFEVAIHQGATHVRVGSALFGSRPRPA
>Mature_238_residues
MNRSGANAQSASITHSEAPARLAGIQSAIEQACRDANRAREAVTLIAVSKTFGAAEIWPVIAAGQRVFGENRVQESQAKW
PELRARQAGLELHLIGPLQSNKAADAVALFDVIHTVDRPKIAYALAEEMSRQGRRLPVFIQVNTGAEPQKAGILPEAADA
FIAECRDKAGLDVRGLMCIPPAEDVPAPHFALLAEIARHNDLPGLSMGMSADFEVAIHQGATHVRVGSALFGSRPRPA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=210, Percent_Identity=37.6190476190476, Blast_Score=104, Evalue=6e-23,
Organism=Escherichia coli, GI1789321, Length=224, Percent_Identity=40.625, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=221, Percent_Identity=37.5565610859729, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=221, Percent_Identity=35.2941176470588, Blast_Score=91, Evalue=1e-19,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=36.0189573459716, Blast_Score=101, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25389; Mature: 25389

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSGANAQSASITHSEAPARLAGIQSAIEQACRDANRAREAVTLIAVSKTFGAAEIWPV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHH
IAAGQRVFGENRVQESQAKWPELRARQAGLELHLIGPLQSNKAADAVALFDVIHTVDRPK
HHHCHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCH
IAYALAEEMSRQGRRLPVFIQVNTGAEPQKAGILPEAADAFIAECRDKAGLDVRGLMCIP
HHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEECC
PAEDVPAPHFALLAEIARHNDLPGLSMGMSADFEVAIHQGATHVRVGSALFGSRPRPA
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEECHHHHCCCCCCC
>Mature Secondary Structure
MNRSGANAQSASITHSEAPARLAGIQSAIEQACRDANRAREAVTLIAVSKTFGAAEIWPV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHH
IAAGQRVFGENRVQESQAKWPELRARQAGLELHLIGPLQSNKAADAVALFDVIHTVDRPK
HHHCHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCH
IAYALAEEMSRQGRRLPVFIQVNTGAEPQKAGILPEAADAFIAECRDKAGLDVRGLMCIP
HHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEECC
PAEDVPAPHFALLAEIARHNDLPGLSMGMSADFEVAIHQGATHVRVGSALFGSRPRPA
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEECHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]