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The map label for this gene is ccmL [H]

Identifier: 158338480

GI number: 158338480

Start: 5442344

End: 5442631

Strand: Direct

Name: ccmL [H]

Synonym: AM1_5382

Alternate gene names: 158338480

Gene position: 5442344-5442631 (Clockwise)

Preceding gene: 158338479

Following gene: 158338481

Centisome position: 83.68

GC content: 46.18

Gene sequence:

>288_bases
GTGAGAATCGCAAAAGTTCTAGGTACCGTAGTTAGTACCCAAAAAGCTCACAGCCTCCAGGGCACCAAGTTCTTGTTGGT
ACAGCGAGTCGATCATGAAGGTCAATTACTTCCTGAATATGATGTAGCTGCTGACTGTGTAGGCGCAGGGGTTGATGAGT
GGGTATTAATTACTCAAGGTAGTGCAGCCAGGCAAATGCCTGAATATGAACGACGGCCATTAGATGCCCTAGTTATTGCC
ATCATTGATACTGTCTCAGTCTCAGGGGGACGTATTTACAGTAAGTGA

Upstream 100 bases:

>100_bases
TGTGTTGCCCATGCGCTACACCGAGGAAGTTGAGCAATTCCGCGAGAGTGTTAGTGGGCCCCGTGCACTACCTATTCGTA
AATCCTAGTCACAGATCTGA

Downstream 100 bases:

>100_bases
TTCAGTCATCAATTCCGATGTTTGGATATTTTTCCCAACCTTCTAGGAGGTGTGATTGCTTGAAACCTTACGTAAGATTA
TCGGCATCCTAGCTGACTCC

Product: carbon dioxide concentrating mechanism protein CcmL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MRIAKVLGTVVSTQKAHSLQGTKFLLVQRVDHEGQLLPEYDVAADCVGAGVDEWVLITQGSAARQMPEYERRPLDALVIA
IIDTVSVSGGRIYSK

Sequences:

>Translated_95_residues
MRIAKVLGTVVSTQKAHSLQGTKFLLVQRVDHEGQLLPEYDVAADCVGAGVDEWVLITQGSAARQMPEYERRPLDALVIA
IIDTVSVSGGRIYSK
>Mature_95_residues
MRIAKVLGTVVSTQKAHSLQGTKFLLVQRVDHEGQLLPEYDVAADCVGAGVDEWVLITQGSAARQMPEYERRPLDALVIA
IIDTVSVSGGRIYSK

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4576

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli and S.typhimurium CchB [H]

Homologues:

Organism=Escherichia coli, GI1788798, Length=92, Percent_Identity=43.4782608695652, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004992
- ProDom:   PD012510 [H]

Pfam domain/function: PF03319 EutN_CcmL [H]

EC number: NA

Molecular weight: Translated: 10338; Mature: 10338

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAKVLGTVVSTQKAHSLQGTKFLLVQRVDHEGQLLPEYDVAADCVGAGVDEWVLITQG
CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECC
SAARQMPEYERRPLDALVIAIIDTVSVSGGRIYSK
CHHHCCCCCHHCCHHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure
MRIAKVLGTVVSTQKAHSLQGTKFLLVQRVDHEGQLLPEYDVAADCVGAGVDEWVLITQG
CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECC
SAARQMPEYERRPLDALVIAIIDTVSVSGGRIYSK
CHHHCCCCCHHCCHHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8491708 [H]