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The map label for this gene is ccmK [H]

Identifier: 158338479

GI number: 158338479

Start: 5441984

End: 5442331

Strand: Direct

Name: ccmK [H]

Synonym: AM1_5381

Alternate gene names: 158338479

Gene position: 5441984-5442331 (Clockwise)

Preceding gene: 158338478

Following gene: 158338480

Centisome position: 83.67

GC content: 53.16

Gene sequence:

>348_bases
ATGTCGATAGCAGTTGGGATGGTGGAAACCCTCGGCTTCCCAGCAGTGGTCGAAGCTGCTGATGCCATGGTCAAAGCGGC
TCGTGTCACCTTAGTCGGTTACGAGAAGATTGGGAGTGGTCGGGTTACGGTTATTGTTCGGGGCGACGTTTCAGAAGTTC
AGGCGTCGGTTGCCGCTGGAACTGAGTCTGTCAAACGTGTGAATGGTGGACAGGTTTTGTCTACTCACATCATCGCTCGT
CCTCATGAAAACCTGGAGTATGTGTTGCCCATGCGCTACACCGAGGAAGTTGAGCAATTCCGCGAGAGTGTTAGTGGGCC
CCGTGCACTACCTATTCGTAAATCCTAG

Upstream 100 bases:

>100_bases
AATCATTAGGTGTGAATATTTACCCAGATTGAGTTCATAGAAGTCTTGCCTTTTTTGGGCAAGACATCATTCGTAAAGCG
AGAGAATGGAGTTATAAACT

Downstream 100 bases:

>100_bases
TCACAGATCTGAGTGAGAATCGCAAAAGTTCTAGGTACCGTAGTTAGTACCCAAAAAGCTCACAGCCTCCAGGGCACCAA
GTTCTTGTTGGTACAGCGAG

Product: carbon dioxide concentrating mechanism protein CcmK

Products: NA

Alternate protein names: Carboxysome shell protein CsoS1 [H]

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSIAVGMVETLGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAGTESVKRVNGGQVLSTHIIAR
PHENLEYVLPMRYTEEVEQFRESVSGPRALPIRKS

Sequences:

>Translated_115_residues
MSIAVGMVETLGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAGTESVKRVNGGQVLSTHIIAR
PHENLEYVLPMRYTEEVEQFRESVSGPRALPIRKS
>Mature_114_residues
SIAVGMVETLGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAGTESVKRVNGGQVLSTHIIARP
HENLEYVLPMRYTEEVEQFRESVSGPRALPIRKS

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=88, Percent_Identity=51.1363636363636, Blast_Score=85, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 12323; Mature: 12192

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS01139 BACT_MICROCOMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAVGMVETLGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAG
CCCCCCHHHHCCCCHHHHHHHHHHHHHHEEEEEHEECCCCEEEEEEECCHHHHHHHHHHC
TESVKRVNGGQVLSTHIIARPHENLEYVLPMRYTEEVEQFRESVSGPRALPIRKS
HHHHHHCCCCEEEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SIAVGMVETLGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAG
CCCCCHHHHCCCCHHHHHHHHHHHHHHEEEEEHEECCCCEEEEEEECCHHHHHHHHHHC
TESVKRVNGGQVLSTHIIARPHENLEYVLPMRYTEEVEQFRESVSGPRALPIRKS
HHHHHHCCCCEEEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA