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The map label for this gene is psaD [H]

Identifier: 158338248

GI number: 158338248

Start: 5206310

End: 5206729

Strand: Reverse

Name: psaD [H]

Synonym: AM1_5144

Alternate gene names: 158338248

Gene position: 5206729-5206310 (Counterclockwise)

Preceding gene: 158338249

Following gene: 158338247

Centisome position: 80.06

GC content: 49.52

Gene sequence:

>420_bases
ATGGCAGAAACACTGACTGGACAAACTCCATTGTTCGGCGGCAGCACTGGCGGATTGCTCTCGAGCGCTGAAACAGAAGA
AAAATATGCCATCACCTGGACAAGTCCGAAGCAACAGGTCTTCGAAATGCCTACTGGTGGCGCAGCGGTGATGAACGAGG
GAGAAAATCTCTTGTATCTTGCTCGCAAAGAACAATGCCTTGCTCTGGGTCTCCGACAACTGCGCACTAAGAAGATCATG
GATTATAAGATCTACCGGGTGTTACCGGATGGATCGAATACTCTCCTTCATCCAAAAGATGGGGTCTTTCCTGAAAAATC
CAATGAAGGCCGTGCGGCAGTCAATAGCGTCGCTCGCTCCATTGGTGAAAACCCGAATCCTGGTGCCATCAAATACACAG
GCAAGAAAGCCTACGATTAG

Upstream 100 bases:

>100_bases
GATCCAGCTGAACTTGATTAAAGGGGACGGACGCGATGATAGGATGCCCTCTAGAAGAGATTTAGGTACCTCAATCAGTA
CCGTATTGGGAGAAAAGTTA

Downstream 100 bases:

>100_bases
GCCGATTACCTCCAAAACAACCCTTTCAACTTCGGTTGATTGTGTTGCGCATTTTTTCTTCTACTTTATGAACCCCTCCA
TTGGTGGGGTTCAACTTTTT

Product: photosystem I protein PsaD

Products: NA

Alternate protein names: Photosystem I 16 kDa polypeptide; PSI-D [H]

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MAETLTGQTPLFGGSTGGLLSSAETEEKYAITWTSPKQQVFEMPTGGAAVMNEGENLLYLARKEQCLALGLRQLRTKKIM
DYKIYRVLPDGSNTLLHPKDGVFPEKSNEGRAAVNSVARSIGENPNPGAIKYTGKKAYD

Sequences:

>Translated_139_residues
MAETLTGQTPLFGGSTGGLLSSAETEEKYAITWTSPKQQVFEMPTGGAAVMNEGENLLYLARKEQCLALGLRQLRTKKIM
DYKIYRVLPDGSNTLLHPKDGVFPEKSNEGRAAVNSVARSIGENPNPGAIKYTGKKAYD
>Mature_138_residues
AETLTGQTPLFGGSTGGLLSSAETEEKYAITWTSPKQQVFEMPTGGAAVMNEGENLLYLARKEQCLALGLRQLRTKKIMD
YKIYRVLPDGSNTLLHPKDGVFPEKSNEGRAAVNSVARSIGENPNPGAIKYTGKKAYD

Specific function: PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psaD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003685 [H]

Pfam domain/function: PF02531 PsaD [H]

EC number: NA

Molecular weight: Translated: 15096; Mature: 14965

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETLTGQTPLFGGSTGGLLSSAETEEKYAITWTSPKQQVFEMPTGGAAVMNEGENLLYL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEECCCCEEEE
ARKEQCLALGLRQLRTKKIMDYKIYRVLPDGSNTLLHPKDGVFPEKSNEGRAAVNSVARS
ECCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
IGENPNPGAIKYTGKKAYD
HCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
AETLTGQTPLFGGSTGGLLSSAETEEKYAITWTSPKQQVFEMPTGGAAVMNEGENLLYL
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEECCCCEEEE
ARKEQCLALGLRQLRTKKIMDYKIYRVLPDGSNTLLHPKDGVFPEKSNEGRAAVNSVARS
ECCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
IGENPNPGAIKYTGKKAYD
HCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8486290; 1946334; 2119498 [H]