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The map label for this gene is rbpE [H]

Identifier: 158338245

GI number: 158338245

Start: 5203849

End: 5204262

Strand: Direct

Name: rbpE [H]

Synonym: AM1_5142

Alternate gene names: 158338245

Gene position: 5203849-5204262 (Clockwise)

Preceding gene: 158338241

Following gene: 158338250

Centisome position: 80.01

GC content: 46.86

Gene sequence:

>414_bases
ATGTCCATCCGCCTATACGTCGGTAATTTACCCAAAGAGTTGGACCGGGACGAACTAGCTGCGTTATTCACTGCAGAGGT
GGGTGAACTCACGTCCACGAAAGTGGTTACCGATCGAAAGACCGGTAAATGTCGCGGGTTTGGTTTTGTCACTGTGGAAA
CAGATGAGCAAGCAGACCAAGTGATTGCTAAATTAAATGGGCATATGTTCAAAGACAATGCCTTGAAAATTGAGAAAGCC
TTACCGAAGAGCAAGGAAGCAAATAGCCAAGGGGCAGGCAATAACGCCCCCCGTCGTGGCAACAAGAACAAATCTCGCTC
TTACACTCAAGCAGAAGCAGCTCAACCTGATCCAAGATGGGCTGACGAGTTAGAAAAGCTCAAGGAAATGTTGTTTGCTC
AAACTCAGTCTTAA

Upstream 100 bases:

>100_bases
GGCGGTGGGCACTTGGCTTATGCCAAGTCACCCTCCTGTTCAAATCTAGTGTCCTTTTATTTTTTTTAGCTCATATATCA
ATCTTCTGGAGGTATTCTCA

Downstream 100 bases:

>100_bases
GTCGTCTTCATATCTTCAGACTTTTGATATAAAGACCCTTGATACAGCGTTTGCTCTTGATGAGTCTCTAACACGCAATC
TGAACGGGGATAGGCCACGC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSIRLYVGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQVIAKLNGHMFKDNALKIEKA
LPKSKEANSQGAGNNAPRRGNKNKSRSYTQAEAAQPDPRWADELEKLKEMLFAQTQS

Sequences:

>Translated_137_residues
MSIRLYVGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQVIAKLNGHMFKDNALKIEKA
LPKSKEANSQGAGNNAPRRGNKNKSRSYTQAEAAQPDPRWADELEKLKEMLFAQTQS
>Mature_136_residues
SIRLYVGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQVIAKLNGHMFKDNALKIEKAL
PKSKEANSQGAGNNAPRRGNKNKSRSYTQAEAAQPDPRWADELEKLKEMLFAQTQS

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 15200; Mature: 15069

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRLYVGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQ
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECCHHHHH
VIAKLNGHMFKDNALKIEKALPKSKEANSQGAGNNAPRRGNKNKSRSYTQAEAAQPDPRW
HHHHHCCCEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHH
ADELEKLKEMLFAQTQS
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIRLYVGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQ
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECCHHHHH
VIAKLNGHMFKDNALKIEKALPKSKEANSQGAGNNAPRRGNKNKSRSYTQAEAAQPDPRW
HHHHHCCCEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHH
ADELEKLKEMLFAQTQS
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]