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The map label for this gene is yciO [H]

Identifier: 158338241

GI number: 158338241

Start: 5199925

End: 5200587

Strand: Direct

Name: yciO [H]

Synonym: AM1_5138

Alternate gene names: 158338241

Gene position: 5199925-5200587 (Clockwise)

Preceding gene: 158338239

Following gene: 158338245

Centisome position: 79.95

GC content: 48.27

Gene sequence:

>663_bases
ATGGCCCAAATTTATACAGTTCATCCTCAAGATCCCCAACAGCGAACGATTGACGCTATTCGGGCTGATCTACTGAATGG
AGCGGTCATGCTCTATCCTACAGACACGGTTTATGCCATTGGCTGTGATATCAACGCCAAGGCTGCGGTTCAACGGGTTC
GGCAAATCAAGCAGATGTCCAATGACAAACCGCTGACATTCTTATGTTCATCTCTCTCGAATATCGCTCAGTATGCGCGA
GTGAGCGATTCAGCCTACAAAATCATGCGTAAGCTGATTCCAGGTCCCTATACCTTTTTGTTGCCTGCCACCAAGCTCGT
CCCTAAATTGGTCCAAAATCCCAAGCGAAAAACCACTGGCATTCGAGTGCCGGATCATCCAGTCTGCCTGTCCCTATTGG
ACTCCCTAGCCACTCCGATTATCTCGACATCCGCGCATTTCTCGGATCAGGAAAGTGTTCACGGCTGGTCAAAAAAACAA
GAGCCTCTCACCCCAGTTGAACTCTTTGATCATTTTGATAAGCAAGTGGATCTAATTATCGAAAATGGCCAAGACCTAAG
TACTAAAGTCTCAACGATTTTAGATCTCTGCCAAGACCAGCCTGCAGTCGTTCGCGAGGGGCTGGGTTGGGATACCCTTT
CATCCGAATTCGCCTGGGTTTAG

Upstream 100 bases:

>100_bases
CCCCGCGCGGGAGCATCGAATTTTAGTGTACCTGTCCTCATGGCTGGAAAGCCAACTGGTTTTGCTCATGGAACAAAGCC
AGATGACAAAGGAGAAGATC

Downstream 100 bases:

>100_bases
TTTGGGTCCCGCAAACGGTAATAGTCTTCTAAGGTTTGTTCCACCGCATTCAAGATATCGTTTTGTTGCCACCCCTGGTA
GAGATGAGCTGCGATCGCAC

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAQIYTVHPQDPQQRTIDAIRADLLNGAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMSNDKPLTFLCSSLSNIAQYAR
VSDSAYKIMRKLIPGPYTFLLPATKLVPKLVQNPKRKTTGIRVPDHPVCLSLLDSLATPIISTSAHFSDQESVHGWSKKQ
EPLTPVELFDHFDKQVDLIIENGQDLSTKVSTILDLCQDQPAVVREGLGWDTLSSEFAWV

Sequences:

>Translated_220_residues
MAQIYTVHPQDPQQRTIDAIRADLLNGAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMSNDKPLTFLCSSLSNIAQYAR
VSDSAYKIMRKLIPGPYTFLLPATKLVPKLVQNPKRKTTGIRVPDHPVCLSLLDSLATPIISTSAHFSDQESVHGWSKKQ
EPLTPVELFDHFDKQVDLIIENGQDLSTKVSTILDLCQDQPAVVREGLGWDTLSSEFAWV
>Mature_219_residues
AQIYTVHPQDPQQRTIDAIRADLLNGAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMSNDKPLTFLCSSLSNIAQYARV
SDSAYKIMRKLIPGPYTFLLPATKLVPKLVQNPKRKTTGIRVPDHPVCLSLLDSLATPIISTSAHFSDQESVHGWSKKQE
PLTPVELFDHFDKQVDLIIENGQDLSTKVSTILDLCQDQPAVVREGLGWDTLSSEFAWV

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=169, Percent_Identity=31.3609467455621, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87081864, Length=209, Percent_Identity=40.1913875598086, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI2367210, Length=139, Percent_Identity=31.6546762589928, Blast_Score=78, Evalue=4e-16,
Organism=Drosophila melanogaster, GI78707274, Length=105, Percent_Identity=31.4285714285714, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 24504; Mature: 24373

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQIYTVHPQDPQQRTIDAIRADLLNGAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMS
CCEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHC
NDKPLTFLCSSLSNIAQYARVSDSAYKIMRKLIPGPYTFLLPATKLVPKLVQNPKRKTTG
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCC
IRVPDHPVCLSLLDSLATPIISTSAHFSDQESVHGWSKKQEPLTPVELFDHFDKQVDLII
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHEEEEE
ENGQDLSTKVSTILDLCQDQPAVVREGLGWDTLSSEFAWV
ECCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AQIYTVHPQDPQQRTIDAIRADLLNGAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMS
CEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHC
NDKPLTFLCSSLSNIAQYARVSDSAYKIMRKLIPGPYTFLLPATKLVPKLVQNPKRKTTG
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCC
IRVPDHPVCLSLLDSLATPIISTSAHFSDQESVHGWSKKQEPLTPVELFDHFDKQVDLII
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHEEEEE
ENGQDLSTKVSTILDLCQDQPAVVREGLGWDTLSSEFAWV
ECCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]