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The map label for this gene is ribD [C]

Identifier: 158335091

GI number: 158335091

Start: 1928072

End: 1928764

Strand: Direct

Name: ribD [C]

Synonym: AM1_1932

Alternate gene names: 158335091

Gene position: 1928072-1928764 (Clockwise)

Preceding gene: 158335088

Following gene: 158335097

Centisome position: 29.65

GC content: 53.68

Gene sequence:

>693_bases
ATGGCCGAAACACCTCTCCAGAGACCCACAACAACCGTTGTTTTGGCGATGAGTGCAGACGGCAAAATTGCCGATGCCCA
ACATTCTCCCCCTGAGTTTGGGTCTGATGAAGATTATGCCCATTTAGAGCGACAAGTTGCGGCTGCTGATGGCATACTTT
TTGGATCGGCCACCCTCAAAGCCGGGGAAACCGCTATGCGAGTGGTGACCCAAGATCTCATTAATGCCCGTTTAGAGCGA
GGCCAGCCCGAGCAGCCTGCCCAAATTGTCTGTACGCGGTCGGGGGATTTAGACCCCAACCTCAAATTCTTCCAACAAGC
CGTCCCCCATTGGCTAGTGACGACCCAGGCCGGTGGCCAATCCTGGCAAGGGACCTCCCATTTCGAGCAAATTTTCACCT
ATGGAACAGAAGCCCAATCCATTGATTGGGGGCAGACATTGGCGTCAATGCCTGCCTTAGGCATTCACAAAATAGCGGTG
CTTGGGGGCGGCCAAATTGTGGCCGCCCTTTTAGCAGAAGATCTAATCGACGAACTTCACCTAACCGTTTGCCCCCTCTT
GATTGGCGGAGCGTCCACTCCTACCCCTGTGGCGGGTCAAGGCTGGCTACAGCAGGATGCACCTGGGTTAGAGCTGCTTT
CTGTTAAGCAAGTTGAGAACGAATTGTTTTTGCACTATCGTCGCCTTCGTTAG

Upstream 100 bases:

>100_bases
AACGAACTTGGGCAAGGATAGCAGCTCCCTATTCAGGTTTAGTTGATCACGCTACCCTAAGAGAATAGCTTGTTTATATT
GGACGACAAGACTGAACTGT

Downstream 100 bases:

>100_bases
GAAGCGTCTTCTAGCACAATACTCGGGGTCAGGTTTTGCTAACCACGATTATTCTGAATCAGACTCGTCTTCGTCTGCGT
TGGCGGCAGGACCTTCATGC

Product: riboflavin biosynthesis protein RibD domain-containing protein

Products: NA

Alternate protein names: HTP reductase [H]

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MAETPLQRPTTTVVLAMSADGKIADAQHSPPEFGSDEDYAHLERQVAAADGILFGSATLKAGETAMRVVTQDLINARLER
GQPEQPAQIVCTRSGDLDPNLKFFQQAVPHWLVTTQAGGQSWQGTSHFEQIFTYGTEAQSIDWGQTLASMPALGIHKIAV
LGGGQIVAALLAEDLIDELHLTVCPLLIGGASTPTPVAGQGWLQQDAPGLELLSVKQVENELFLHYRRLR

Sequences:

>Translated_230_residues
MAETPLQRPTTTVVLAMSADGKIADAQHSPPEFGSDEDYAHLERQVAAADGILFGSATLKAGETAMRVVTQDLINARLER
GQPEQPAQIVCTRSGDLDPNLKFFQQAVPHWLVTTQAGGQSWQGTSHFEQIFTYGTEAQSIDWGQTLASMPALGIHKIAV
LGGGQIVAALLAEDLIDELHLTVCPLLIGGASTPTPVAGQGWLQQDAPGLELLSVKQVENELFLHYRRLR
>Mature_229_residues
AETPLQRPTTTVVLAMSADGKIADAQHSPPEFGSDEDYAHLERQVAAADGILFGSATLKAGETAMRVVTQDLINARLERG
QPEQPAQIVCTRSGDLDPNLKFFQQAVPHWLVTTQAGGQSWQGTSHFEQIFTYGTEAQSIDWGQTLASMPALGIHKIAVL
GGGQIVAALLAEDLIDELHLTVCPLLIGGASTPTPVAGQGWLQQDAPGLELLSVKQVENELFLHYRRLR

Specific function: Converts 2,5-Diamino-6-(Ribosylamino)-4(3h)-Pyrimidinone 5'-Phosphate Into 5-Amino-6-(Ribosylamino)-2,4(1h,3h)- Pyrimidinedione 5'-Phosphate. [C]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HTP reductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006401
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF01872 RibD_C [H]

EC number: =1.1.1.193 [H]

Molecular weight: Translated: 24787; Mature: 24656

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETPLQRPTTTVVLAMSADGKIADAQHSPPEFGSDEDYAHLERQVAAADGILFGSATLK
CCCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCC
AGETAMRVVTQDLINARLERGQPEQPAQIVCTRSGDLDPNLKFFQQAVPHWLVTTQAGGQ
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEECCCCC
SWQGTSHFEQIFTYGTEAQSIDWGQTLASMPALGIHKIAVLGGGQIVAALLAEDLIDELH
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
LTVCPLLIGGASTPTPVAGQGWLQQDAPGLELLSVKQVENELFLHYRRLR
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AETPLQRPTTTVVLAMSADGKIADAQHSPPEFGSDEDYAHLERQVAAADGILFGSATLK
CCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCC
AGETAMRVVTQDLINARLERGQPEQPAQIVCTRSGDLDPNLKFFQQAVPHWLVTTQAGGQ
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEECCCCC
SWQGTSHFEQIFTYGTEAQSIDWGQTLASMPALGIHKIAVLGGGQIVAALLAEDLIDELH
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
LTVCPLLIGGASTPTPVAGQGWLQQDAPGLELLSVKQVENELFLHYRRLR
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]