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The map label for this gene is rpe [H]

Identifier: 158334572

GI number: 158334572

Start: 1380175

End: 1380882

Strand: Reverse

Name: rpe [H]

Synonym: AM1_1399

Alternate gene names: 158334572

Gene position: 1380882-1380175 (Counterclockwise)

Preceding gene: 158334573

Following gene: 158334567

Centisome position: 21.23

GC content: 46.33

Gene sequence:

>708_bases
ATGACTCTATCTTCTTCACCCAAATCGACCGTCATCTCTCCGTCTATCCTATCTGCGGATTTTAGCCGTTTAGGTGAGGA
AGTTCGAGCCGTCGATAAAGCAGGGGCAGACTGGATTCATGTTGATGTTATGGATGGTCGTTTTGTTCCGAACATCACTA
TTGGTCCCTTGATCGTGGATGCGCTACGCCCGGTTACTCAGAAGCCTTTGGATGTTCACTTGATGATTGTGGAACCAGAT
CGATATGTTGCCGATTTTGCTAAAGCAGGGGCGGATATCATTTCAGTTCACGCTGAAGCAAGTGCCACAACCCACCTTCA
TCGCGCCTTAGGCCAAATTAAAGAACTGGGCAAGATGGCAGGTGTAGTTTTGAACCCGGGCACGTCTCTAGAACAGATTG
ATTACGTTTTAGAACTCTGTGATCTGGTTTTGATCATGAGTGTTAACCCAGGTTTTGGCGGACAAAGTTTCATTCCAGGA
GTACTGCCCAAAATCCGTCAACTTCGCCAAATGTGTGATGAACGTGGTCTAGATCCTTGGATTGAAGTGGATGGTGGTCT
CAAAGCGAACAATACTTGGCAAGTACTTGAAGCCGGAGCAAATGCTATTGTGGCTGGTTCAGCGGTGTTTAAAGCAGATG
ACTATGCTGAAACTATCAAAGCCATTCGTAACAGCAAACGTCCTGAACCCGAATTAGTTACAGCCTAA

Upstream 100 bases:

>100_bases
TAGGTCAAAGTTGAAGATTTTGTTAAACTGGTTACTGCGAAAGTGCTCAAGTTTTTAAAATTTGCCTCTTTAAGCAGTCG
TCATCACCGGATCTTTTACC

Downstream 100 bases:

>100_bases
TTCCAAATATTTTTTATATTCCATATAAAGTACCCCTCATCTTGCTTCAAGATGAGGGGTACTTTTATGATTCTTAGTGC
GAACTAGGGATTCAGAAGCT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTLSSSPKSTVISPSILSADFSRLGEEVRAVDKAGADWIHVDVMDGRFVPNITIGPLIVDALRPVTQKPLDVHLMIVEPD
RYVADFAKAGADIISVHAEASATTHLHRALGQIKELGKMAGVVLNPGTSLEQIDYVLELCDLVLIMSVNPGFGGQSFIPG
VLPKIRQLRQMCDERGLDPWIEVDGGLKANNTWQVLEAGANAIVAGSAVFKADDYAETIKAIRNSKRPEPELVTA

Sequences:

>Translated_235_residues
MTLSSSPKSTVISPSILSADFSRLGEEVRAVDKAGADWIHVDVMDGRFVPNITIGPLIVDALRPVTQKPLDVHLMIVEPD
RYVADFAKAGADIISVHAEASATTHLHRALGQIKELGKMAGVVLNPGTSLEQIDYVLELCDLVLIMSVNPGFGGQSFIPG
VLPKIRQLRQMCDERGLDPWIEVDGGLKANNTWQVLEAGANAIVAGSAVFKADDYAETIKAIRNSKRPEPELVTA
>Mature_234_residues
TLSSSPKSTVISPSILSADFSRLGEEVRAVDKAGADWIHVDVMDGRFVPNITIGPLIVDALRPVTQKPLDVHLMIVEPDR
YVADFAKAGADIISVHAEASATTHLHRALGQIKELGKMAGVVLNPGTSLEQIDYVLELCDLVLIMSVNPGFGGQSFIPGV
LPKIRQLRQMCDERGLDPWIEVDGGLKANNTWQVLEAGANAIVAGSAVFKADDYAETIKAIRNSKRPEPELVTA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=215, Percent_Identity=41.3953488372093, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI219879828, Length=215, Percent_Identity=39.0697674418605, Blast_Score=146, Evalue=2e-35,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=33.7278106508876, Blast_Score=93, Evalue=2e-19,
Organism=Escherichia coli, GI1789788, Length=218, Percent_Identity=52.7522935779816, Blast_Score=227, Evalue=5e-61,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=37.0558375634518, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1790754, Length=209, Percent_Identity=32.5358851674641, Blast_Score=103, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=217, Percent_Identity=40.5529953917051, Blast_Score=157, Evalue=4e-39,
Organism=Saccharomyces cerevisiae, GI6322341, Length=232, Percent_Identity=40.5172413793103, Blast_Score=165, Evalue=6e-42,
Organism=Drosophila melanogaster, GI24586301, Length=219, Percent_Identity=38.8127853881278, Blast_Score=157, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 25303; Mature: 25172

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSSSPKSTVISPSILSADFSRLGEEVRAVDKAGADWIHVDVMDGRFVPNITIGPLIVD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCHHHHHHH
ALRPVTQKPLDVHLMIVEPDRYVADFAKAGADIISVHAEASATTHLHRALGQIKELGKMA
HHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHC
GVVLNPGTSLEQIDYVLELCDLVLIMSVNPGFGGQSFIPGVLPKIRQLRQMCDERGLDPW
CEEECCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
IEVDGGLKANNTWQVLEAGANAIVAGSAVFKADDYAETIKAIRNSKRPEPELVTA
EEECCCCCCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TLSSSPKSTVISPSILSADFSRLGEEVRAVDKAGADWIHVDVMDGRFVPNITIGPLIVD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCHHHHHHH
ALRPVTQKPLDVHLMIVEPDRYVADFAKAGADIISVHAEASATTHLHRALGQIKELGKMA
HHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHC
GVVLNPGTSLEQIDYVLELCDLVLIMSVNPGFGGQSFIPGVLPKIRQLRQMCDERGLDPW
CEEECCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
IEVDGGLKANNTWQVLEAGANAIVAGSAVFKADDYAETIKAIRNSKRPEPELVTA
EEECCCCCCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]