| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is trxB [H]
Identifier: 158319045
GI number: 158319045
Start: 8963979
End: 8965025
Strand: Direct
Name: trxB [H]
Synonym: Franean1_7328
Alternate gene names: 158319045
Gene position: 8963979-8965025 (Clockwise)
Preceding gene: 158319044
Following gene: 158319046
Centisome position: 99.8
GC content: 71.35
Gene sequence:
>1047_bases GTGACAGCCCAGGGCAAGGACCAGGCCGGTCAGGCCGCCGGAGCGGAGCGTTCCGGCGAGCGCGTCCTGGACGTCGTCAT CATCGGGTCGGGGCCGGCCGGCTACACCGCGGCGATCTACACCGCCCGGGCGAACCTGAAGCCGGTCGTCTTCGAGGGCG CGGTATCCGCGGGCGGCGCGCTGATGACCACGACCGAGGTGGAGAACTTCCCGGGCTTCCCCGAGGGCATCCAGGGGCCG GAGCTCATGGAGAACCTGCGCGCCCAGGCGGAGCGGTTCGGCGCCGAGCTCATCGCGGACGACGTCACCGAAGTCGACCT GGCCGCGGATCCGAAGGTGGTCAAGGTGGGCGACGAGACCTACCTGGCCCGCTCGGTCATCGTCGCGACCGGCTCGGCCT ACAAGAAGCTCGGCGTCGAGCACGAGGACCGGCTGCTCGGCCGGGGCGTGTCGGCCTGCGCGACCTGTGACGGCTTCTTC TTCCGGGACCAGGACATCGCGGTCGTCGGCGGCGGCGACTCGGCGCTGGAGGAGGCGACCTTCCTCACCCGGTTCGCGAA GTCGGTGACGATCGTGCACCGGCGCGACAGGCTGCGCGCCAGCGCGATCATGCAGGAGCGGGCGTTCGCCAACCCGAAGG TCCGGTTCCGGTGGAACGCCGTGGTCGAGGAGGTCCTCGGCGAGGACAAGGTCACCGGCGTCCGGCTGCGTGACACGGTC ACCGACAAGACGGACGAGCTGGCGATCACCGGCCTGTTCGTGGCGATCGGCCACCTCCCCCGCACGGATCTGATCCACGA CCAGCTCGAGCTGGACGGCGAGGGCTACATCAAGGTGACGCACCCGACCACCCAGACCAACATCGCGGGTGTGTTCGCCT GCGGTGACGTCGTCGACCACACCTACCGCCAGGCGATCACCGCGGCCGGCACCGGGTGCTCCGCCGCCCTCGACGCCGAG CGCTACATCGCCGGCCTGGAGGGCGCCGCTGACAGCGCCGCCGAGGCGCCCCGGGTACCGGCACCGGAGCTCGCCGCGAC GACCTGA
Upstream 100 bases:
>100_bases CCGCGGTCCGCGACGGTTATGGGGGCAGACATCACGTCGGCGGGGCCAACGATCGACAGAATCGGCGAAGCCTCGTACGA CAGTCGTGAAGGGAGTGGGT
Downstream 100 bases:
>100_bases CGCGGACCAACCTGTGCTGTGGCGGGAGCCCCGCCACAGCACAGCCGTCAGCCACCAGTCCAAAGACACAAGAGCGCAAA CCCTGAGGAGAACGCCATGG
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 348; Mature: 347
Protein sequence:
>348_residues MTAQGKDQAGQAAGAERSGERVLDVVIIGSGPAGYTAAIYTARANLKPVVFEGAVSAGGALMTTTEVENFPGFPEGIQGP ELMENLRAQAERFGAELIADDVTEVDLAADPKVVKVGDETYLARSVIVATGSAYKKLGVEHEDRLLGRGVSACATCDGFF FRDQDIAVVGGGDSALEEATFLTRFAKSVTIVHRRDRLRASAIMQERAFANPKVRFRWNAVVEEVLGEDKVTGVRLRDTV TDKTDELAITGLFVAIGHLPRTDLIHDQLELDGEGYIKVTHPTTQTNIAGVFACGDVVDHTYRQAITAAGTGCSAALDAE RYIAGLEGAADSAAEAPRVPAPELAATT
Sequences:
>Translated_348_residues MTAQGKDQAGQAAGAERSGERVLDVVIIGSGPAGYTAAIYTARANLKPVVFEGAVSAGGALMTTTEVENFPGFPEGIQGP ELMENLRAQAERFGAELIADDVTEVDLAADPKVVKVGDETYLARSVIVATGSAYKKLGVEHEDRLLGRGVSACATCDGFF FRDQDIAVVGGGDSALEEATFLTRFAKSVTIVHRRDRLRASAIMQERAFANPKVRFRWNAVVEEVLGEDKVTGVRLRDTV TDKTDELAITGLFVAIGHLPRTDLIHDQLELDGEGYIKVTHPTTQTNIAGVFACGDVVDHTYRQAITAAGTGCSAALDAE RYIAGLEGAADSAAEAPRVPAPELAATT >Mature_347_residues TAQGKDQAGQAAGAERSGERVLDVVIIGSGPAGYTAAIYTARANLKPVVFEGAVSAGGALMTTTEVENFPGFPEGIQGPE LMENLRAQAERFGAELIADDVTEVDLAADPKVVKVGDETYLARSVIVATGSAYKKLGVEHEDRLLGRGVSACATCDGFFF RDQDIAVVGGGDSALEEATFLTRFAKSVTIVHRRDRLRASAIMQERAFANPKVRFRWNAVVEEVLGEDKVTGVRLRDTVT DKTDELAITGLFVAIGHLPRTDLIHDQLELDGEGYIKVTHPTTQTNIAGVFACGDVVDHTYRQAITAAGTGCSAALDAER YIAGLEGAADSAAEAPRVPAPELAATT
Specific function: Component of the thioredoxin-thioredoxin reductase system which may be involved in biosynthesis of penicillins and cephalosporins and may be important in determining the thiol- disulfide redox balance [H]
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=311, Percent_Identity=51.7684887459807, Blast_Score=303, Evalue=1e-83, Organism=Escherichia coli, GI87081763, Length=331, Percent_Identity=32.02416918429, Blast_Score=140, Evalue=1e-34, Organism=Saccharomyces cerevisiae, GI6320560, Length=314, Percent_Identity=46.4968152866242, Blast_Score=291, Evalue=1e-79, Organism=Saccharomyces cerevisiae, GI6321898, Length=314, Percent_Identity=45.859872611465, Blast_Score=283, Evalue=3e-77,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 36795; Mature: 36663
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00573 PYRIDINE_REDOX_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQGKDQAGQAAGAERSGERVLDVVIIGSGPAGYTAAIYTARANLKPVVFEGAVSAGGA CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCCE LMTTTEVENFPGFPEGIQGPELMENLRAQAERFGAELIADDVTEVDLAADPKVVKVGDET EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEECCCH YLARSVIVATGSAYKKLGVEHEDRLLGRGVSACATCDGFFFRDQDIAVVGGGDSALEEAT HHHHEEEEECCCHHHHHCCCHHHHHHHCCCHHHHHCCCCEEECCCEEEECCCCHHHHHHH FLTRFAKSVTIVHRRDRLRASAIMQERAFANPKVRFRWNAVVEEVLGEDKVTGVRLRDTV HHHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCEEEECCC TDKTDELAITGLFVAIGHLPRTDLIHDQLELDGEGYIKVTHPTTQTNIAGVFACGDVVDH CCCCCCCHHHHHHHHHCCCCCHHHHHHHHEECCCCEEEEECCCCCCCCEEEEEHHHHHHH TYRQAITAAGTGCSAALDAERYIAGLEGAADSAAEAPRVPAPELAATT HHHHHHHHCCCCCCHHHCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCC >Mature Secondary Structure TAQGKDQAGQAAGAERSGERVLDVVIIGSGPAGYTAAIYTARANLKPVVFEGAVSAGGA CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCCE LMTTTEVENFPGFPEGIQGPELMENLRAQAERFGAELIADDVTEVDLAADPKVVKVGDET EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEECCCH YLARSVIVATGSAYKKLGVEHEDRLLGRGVSACATCDGFFFRDQDIAVVGGGDSALEEAT HHHHEEEEECCCHHHHHCCCHHHHHHHCCCHHHHHCCCCEEECCCEEEECCCCHHHHHHH FLTRFAKSVTIVHRRDRLRASAIMQERAFANPKVRFRWNAVVEEVLGEDKVTGVRLRDTV HHHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCEEEECCC TDKTDELAITGLFVAIGHLPRTDLIHDQLELDGEGYIKVTHPTTQTNIAGVFACGDVVDH CCCCCCCHHHHHHHHHCCCCCHHHHHHHHEECCCCEEEEECCCCCCCCEEEEEHHHHHHH TYRQAITAAGTGCSAALDAERYIAGLEGAADSAAEAPRVPAPELAATT HHHHHHHHCCCCCCHHHCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8349555; 8423136 [H]