| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is pknB [H]
Identifier: 158319042
GI number: 158319042
Start: 8959020
End: 8961212
Strand: Direct
Name: pknB [H]
Synonym: Franean1_7325
Alternate gene names: 158319042
Gene position: 8959020-8961212 (Clockwise)
Preceding gene: 158319041
Following gene: 158319043
Centisome position: 99.74
GC content: 72.91
Gene sequence:
>2193_bases ATGCCAGGGCCGGACTCGTACACTGAACACGCTGTGCGCGGGCCCCGCCCAACGTCGCCGGTGAACCAGGCGCAGCACCC AGCTCGTCGCGTTGGTCACACGATGCGTTCCGATGCGACGGAGGGTGTCCGGGATGTTCGTTCGCAGTGGCGGAACGCTG GGCGGATCCCCTGCCCGGGTGAGGTGGGGCAACCCGCCGTCGGGTCGGCCGGCGGGTATGCGGACGACGGAGGCGCTGTG GTCGACGGAAGCAACCGACCGCAGGGCGCGGACGTCGATAACGACGTGACCACCGACTCGCCGGGCGAGCGCCCGGCCAG CACGGCCGTGCTGGCCGAATCCGTTCTCGACCGCCGCTACCGTCTCCTGGCGCCGCTGAACACCCGCGGCCCGGTGACCC TGTGGCGGGGTGACGACAACACGCTCGCCCGGCCGGTGGCCGTCCGGATCGTCGAGCACGTCGACCCCGGCACCGACCCC GACGCCGCGGCGGAGATCGATCCGGCTGTCCGGGAGGACGCGGCCCGCGCCCTGCTGAAGGCGGCGATCAACTCCGGGCG GCTGGTACACCCGGGCGCCGCGTCGACCTACGACGCCACGACCACGACCACCGGCACGGCCCGTGTCTCCTATGTCGTCT CGGAGTGGGTGGAGGGGCGCACCCTGCGCCAGCTCGCCACCAACGGGCCACTACGCCCCGAACAGGCCGGGGCCATCGTC CTGGCGGCGGCGCGGGTCCTCTCCGCCGCGCACGACCGCGGCATCCACCACGGCGGGCTCAACCCCGGCGATGTGATCGT CTCCGGCCACGGCACCGTGAAGGTCGTCGACCTGGAGATCGGCGGCGTCCTCGCGGGGCTGGACGGCGCGGCGACGGGCG CGGAGCCCACCATCGGCTCCGACCCGGAGAAGGACGACGCACCCCCCTCGGCCGAGCTGGCGGACGTCCGGGCCCTCGGC GGGCTGCTGTACGCCGGGCTGACCGGCACCTGGCCGCTGCTCGGCGAGCACGCGCTGCCGGCCGCCCCGACGAGCGACGG CCGGCTGCGGACCCCCCGGCAGATCAACTCGGCCGTCCCGCGCGACCTCGACGCGATCACCCTGGCGACCCTCGGCGACG AGCGGGCCGGCGCGCCGATCACGACCGCCGCCGAGCTGGTCTCGGAGCTCGAGGCGGTCAGCCCGGTCGACCAGGTCCTC GACACCGGCCTGATGAGCCTCGGTGACGACGGCCCCGCGAGCACCGAGGCGATGTCGGTCGACGGCTACAACCCGGCCAC GGACGACTACCCCGCCCCCTCCGACTACCCGGGGCAGGGCTACGCCGGCGGGAGCAGCTCCGGCGGCAACGGCTACGGCG GCCGCGACGACTACGACCGCCGCGGCTACGACCAGACCTCCTACCTGGGCCGCGACGGCTACGACCAGACCTCCTACAAC GAGCGCGGCTACGGCGGCCGGAGCGGTTACGACGACCGCGACCGGGGCGGCTACCCGTCGCAGCGCGAGGCGCCCGAGCA GCGCCGGTACGACGACGACCGTTACCCGCCCGCCGGCGGGCACCGCCAGGGCGGTGGGTCGGGCGGGGCTGGCGGCGGCG CCGTCCGCCGGGTCCTGCCCTGGGTGGCCCTGCTGGTGGTGATCGCCCTCGTCGCCGTCGTGGCGGTGATCGCCTTTCGC CCGAAGGACGATGGTGGCGGCAACCCGGGCGGGGATACCGGCCCTTCCTCCATGGCCGTGGTGCCCTCCGGTAACCGGAT TCCTTTCGGCTCGGTCACCTCGTTCGACCCGCCCCCGGCCGGTGACGGGGCGGAGAAGCCGGACCTCGTACCGCTCGCCA CCGATGGGAACCCGGCCACCCAGTGGGCGACGGACGGATACCACAGCCCTCAGTTCGGCGGGCTGAAGAAGGGCGTGGGG CTGCGCTTCGACTTCAACCAGCCGATAACCCCGAGCGAGGTTGTCGTCACCGTCGGGAGGGAAGGCCCGATCACCTTTGA GCTGCGGGCCGGCGATTCGCTCTCGGACAACATCAACGACTACGCGGTCATCGGTGTACCGCAGCAGAACAAGACCGGCG AGGTCCGCATCAGCATGCCGTCCGAGCAGCCGACTCATCGGTACTGGGTGCTGTGGCTGACCGAGCTTCCGTCCAACAAG GGATCGATCGCGGAGATCGAGTTCCGGGGCTGA
Upstream 100 bases:
>100_bases CCACTGATTTCGCGCGATCGCACGCCGGGTCTATGGCGTGTCCATAGGCGGATGGTTCGCCCCGGTGTGCCAAGCTGGCT TGTCCGGAGACATCCGCGAG
Downstream 100 bases:
>100_bases CCGGACGGAATCATGTGCGGCGGGTCGAGGTCGATGCGCGCCAGTCCCGGGTGGCAATCGCCCGTCCTGAGAAGTCGGTG AACCCGCCCGCGGCGGCCAG
Product: serine/threonine protein kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 730; Mature: 729
Protein sequence:
>730_residues MPGPDSYTEHAVRGPRPTSPVNQAQHPARRVGHTMRSDATEGVRDVRSQWRNAGRIPCPGEVGQPAVGSAGGYADDGGAV VDGSNRPQGADVDNDVTTDSPGERPASTAVLAESVLDRRYRLLAPLNTRGPVTLWRGDDNTLARPVAVRIVEHVDPGTDP DAAAEIDPAVREDAARALLKAAINSGRLVHPGAASTYDATTTTTGTARVSYVVSEWVEGRTLRQLATNGPLRPEQAGAIV LAAARVLSAAHDRGIHHGGLNPGDVIVSGHGTVKVVDLEIGGVLAGLDGAATGAEPTIGSDPEKDDAPPSAELADVRALG GLLYAGLTGTWPLLGEHALPAAPTSDGRLRTPRQINSAVPRDLDAITLATLGDERAGAPITTAAELVSELEAVSPVDQVL DTGLMSLGDDGPASTEAMSVDGYNPATDDYPAPSDYPGQGYAGGSSSGGNGYGGRDDYDRRGYDQTSYLGRDGYDQTSYN ERGYGGRSGYDDRDRGGYPSQREAPEQRRYDDDRYPPAGGHRQGGGSGGAGGGAVRRVLPWVALLVVIALVAVVAVIAFR PKDDGGGNPGGDTGPSSMAVVPSGNRIPFGSVTSFDPPPAGDGAEKPDLVPLATDGNPATQWATDGYHSPQFGGLKKGVG LRFDFNQPITPSEVVVTVGREGPITFELRAGDSLSDNINDYAVIGVPQQNKTGEVRISMPSEQPTHRYWVLWLTELPSNK GSIAEIEFRG
Sequences:
>Translated_730_residues MPGPDSYTEHAVRGPRPTSPVNQAQHPARRVGHTMRSDATEGVRDVRSQWRNAGRIPCPGEVGQPAVGSAGGYADDGGAV VDGSNRPQGADVDNDVTTDSPGERPASTAVLAESVLDRRYRLLAPLNTRGPVTLWRGDDNTLARPVAVRIVEHVDPGTDP DAAAEIDPAVREDAARALLKAAINSGRLVHPGAASTYDATTTTTGTARVSYVVSEWVEGRTLRQLATNGPLRPEQAGAIV LAAARVLSAAHDRGIHHGGLNPGDVIVSGHGTVKVVDLEIGGVLAGLDGAATGAEPTIGSDPEKDDAPPSAELADVRALG GLLYAGLTGTWPLLGEHALPAAPTSDGRLRTPRQINSAVPRDLDAITLATLGDERAGAPITTAAELVSELEAVSPVDQVL DTGLMSLGDDGPASTEAMSVDGYNPATDDYPAPSDYPGQGYAGGSSSGGNGYGGRDDYDRRGYDQTSYLGRDGYDQTSYN ERGYGGRSGYDDRDRGGYPSQREAPEQRRYDDDRYPPAGGHRQGGGSGGAGGGAVRRVLPWVALLVVIALVAVVAVIAFR PKDDGGGNPGGDTGPSSMAVVPSGNRIPFGSVTSFDPPPAGDGAEKPDLVPLATDGNPATQWATDGYHSPQFGGLKKGVG LRFDFNQPITPSEVVVTVGREGPITFELRAGDSLSDNINDYAVIGVPQQNKTGEVRISMPSEQPTHRYWVLWLTELPSNK GSIAEIEFRG >Mature_729_residues PGPDSYTEHAVRGPRPTSPVNQAQHPARRVGHTMRSDATEGVRDVRSQWRNAGRIPCPGEVGQPAVGSAGGYADDGGAVV DGSNRPQGADVDNDVTTDSPGERPASTAVLAESVLDRRYRLLAPLNTRGPVTLWRGDDNTLARPVAVRIVEHVDPGTDPD AAAEIDPAVREDAARALLKAAINSGRLVHPGAASTYDATTTTTGTARVSYVVSEWVEGRTLRQLATNGPLRPEQAGAIVL AAARVLSAAHDRGIHHGGLNPGDVIVSGHGTVKVVDLEIGGVLAGLDGAATGAEPTIGSDPEKDDAPPSAELADVRALGG LLYAGLTGTWPLLGEHALPAAPTSDGRLRTPRQINSAVPRDLDAITLATLGDERAGAPITTAAELVSELEAVSPVDQVLD TGLMSLGDDGPASTEAMSVDGYNPATDDYPAPSDYPGQGYAGGSSSGGNGYGGRDDYDRRGYDQTSYLGRDGYDQTSYNE RGYGGRSGYDDRDRGGYPSQREAPEQRRYDDDRYPPAGGHRQGGGSGGAGGGAVRRVLPWVALLVVIALVAVVAVIAFRP KDDGGGNPGGDTGPSSMAVVPSGNRIPFGSVTSFDPPPAGDGAEKPDLVPLATDGNPATQWATDGYHSPQFGGLKKGVGL RFDFNQPITPSEVVVTVGREGPITFELRAGDSLSDNINDYAVIGVPQQNKTGEVRISMPSEQPTHRYWVLWLTELPSNKG SIAEIEFRG
Specific function: Unknown
COG id: COG0515
COG function: function code RTKL; Serine/threonine protein kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 protein kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR005543 - InterPro: IPR000719 - InterPro: IPR017441 - InterPro: IPR017442 - InterPro: IPR008271 [H]
Pfam domain/function: PF03793 PASTA; PF00069 Pkinase [H]
EC number: =2.7.11.1 [H]
Molecular weight: Translated: 76081; Mature: 75950
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: PS50011 PROTEIN_KINASE_DOM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGPDSYTEHAVRGPRPTSPVNQAQHPARRVGHTMRSDATEGVRDVRSQWRNAGRIPCPG CCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EVGQPAVGSAGGYADDGGAVVDGSNRPQGADVDNDVTTDSPGERPASTAVLAESVLDRRY CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH RLLAPLNTRGPVTLWRGDDNTLARPVAVRIVEHVDPGTDPDAAAEIDPAVREDAARALLK HEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHH AAINSGRLVHPGAASTYDATTTTTGTARVSYVVSEWVEGRTLRQLATNGPLRPEQAGAIV HHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHCCCHH LAAARVLSAAHDRGIHHGGLNPGDVIVSGHGTVKVVDLEIGGVLAGLDGAATGAEPTIGS HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEEEECCEEECCCCCCCCCCCCCCC DPEKDDAPPSAELADVRALGGLLYAGLTGTWPLLGEHALPAAPTSDGRLRTPRQINSAVP CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCC RDLDAITLATLGDERAGAPITTAAELVSELEAVSPVDQVLDTGLMSLGDDGPASTEAMSV CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEE DGYNPATDDYPAPSDYPGQGYAGGSSSGGNGYGGRDDYDRRGYDQTSYLGRDGYDQTSYN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCCCCC ERGYGGRSGYDDRDRGGYPSQREAPEQRRYDDDRYPPAGGHRQGGGSGGAGGGAVRRVLP CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH WVALLVVIALVAVVAVIAFRPKDDGGGNPGGDTGPSSMAVVPSGNRIPFGSVTSFDPPPA HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC GDGAEKPDLVPLATDGNPATQWATDGYHSPQFGGLKKGVGLRFDFNQPITPSEVVVTVGR CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCEEEEECC EGPITFELRAGDSLSDNINDYAVIGVPQQNKTGEVRISMPSEQPTHRYWVLWLTELPSNK CCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCC GSIAEIEFRG CCEEEEEECC >Mature Secondary Structure PGPDSYTEHAVRGPRPTSPVNQAQHPARRVGHTMRSDATEGVRDVRSQWRNAGRIPCPG CCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EVGQPAVGSAGGYADDGGAVVDGSNRPQGADVDNDVTTDSPGERPASTAVLAESVLDRRY CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH RLLAPLNTRGPVTLWRGDDNTLARPVAVRIVEHVDPGTDPDAAAEIDPAVREDAARALLK HEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHH AAINSGRLVHPGAASTYDATTTTTGTARVSYVVSEWVEGRTLRQLATNGPLRPEQAGAIV HHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHCCCHH LAAARVLSAAHDRGIHHGGLNPGDVIVSGHGTVKVVDLEIGGVLAGLDGAATGAEPTIGS HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEEEECCEEECCCCCCCCCCCCCCC DPEKDDAPPSAELADVRALGGLLYAGLTGTWPLLGEHALPAAPTSDGRLRTPRQINSAVP CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCC RDLDAITLATLGDERAGAPITTAAELVSELEAVSPVDQVLDTGLMSLGDDGPASTEAMSV CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEE DGYNPATDDYPAPSDYPGQGYAGGSSSGGNGYGGRDDYDRRGYDQTSYLGRDGYDQTSYN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCCCCC ERGYGGRSGYDDRDRGGYPSQREAPEQRRYDDDRYPPAGGHRQGGGSGGAGGGAVRRVLP CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH WVALLVVIALVAVVAVIAFRPKDDGGGNPGGDTGPSSMAVVPSGNRIPFGSVTSFDPPPA HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC GDGAEKPDLVPLATDGNPATQWATDGYHSPQFGGLKKGVGLRFDFNQPITPSEVVVTVGR CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCEEEEECC EGPITFELRAGDSLSDNINDYAVIGVPQQNKTGEVRISMPSEQPTHRYWVLWLTELPSNK CCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCC GSIAEIEFRG CCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12948626 [H]