Click here to switch to the map view.

The map label for this gene is sigW [H]

Identifier: 158319043

GI number: 158319043

Start: 8961263

End: 8962174

Strand: Direct

Name: sigW [H]

Synonym: Franean1_7326

Alternate gene names: 158319043

Gene position: 8961263-8962174 (Clockwise)

Preceding gene: 158319042

Following gene: 158319044

Centisome position: 99.77

GC content: 75.99

Gene sequence:

>912_bases
GTGGCAATCGCCCGTCCTGAGAAGTCGGTGAACCCGCCCGCGGCGGCCAGTGCCCGGTCCTCCGGCCGGGCTCCCGAGGC
CGACCTGGAGGCGCTGCGCCGGCACGTGGCAGGTGATCCGGACGCGTTCGGCGAGCTGTTCCGCGCGCACGCCGACCGGC
TGTGGTCGGTGGCGTTCGCGCTGCTGCAGGACGCCGAGGAGGCCGCGGACGCCGTCCAGGAGGCGATGCTCTCCGCGCAC
CGGCGGGCCGCCGACTTCCGGGGTGAGGCGGCTGTCGGCACCTGGCTGCACCGGATCGTCACCAACGCCGCCCTCGACCG
GCTGCGCCGCCGCGCCGTGCGCCCGACGGTGCCGATGCCCTCGGCCCCCGACGGCGCCCCCTACGAGCCGGCCGACGCCC
GGGACGCCATCGCCGAGCACGACACCCGGATGGACATCGGCGCCGCACTCGGCATGCTTCCGGTCACACTGCGCACCCCC
GTCGTCCTCGTGGACGTCGAGGGCCGCTCGGTCGCCGAGGTGGCCGAACTGCTGGACATACCGGTCGGAACGGTCAAGAG
CCGCTGCGCGCGCGGTCGGGCGCGGCTCGCCGTCCTGCTCGGACACCTTGCCCCCGAACGGGCTCGGCGGCCCGTCGCCG
GGAACCAGCCGGCCTCGCCTTCCGTCTGTGATGAGGGACGGTACGACACATCAGCCGGCGGTCCCGACGAACCGGTCGAC
CGACTGGTCGACGACCAGCCGGTCGAGCAGGCGGGGTCCGACCGCGCGGATGCGGACGGCACCGACCCCACCGGCACGAC
CACTCGTGGCGCCGCCGCCGAACCCGCCGAGATGCCGGGCGCGGCCGGCGTCCCGGGACCCGCCGACCGGACCGGCACGA
CGGCCGGGCGGCTGACTCGCCGGAGGAGGTGA

Upstream 100 bases:

>100_bases
AGCTTCCGTCCAACAAGGGATCGATCGCGGAGATCGAGTTCCGGGGCTGACCGGACGGAATCATGTGCGGCGGGTCGAGG
TCGATGCGCGCCAGTCCCGG

Downstream 100 bases:

>100_bases
TCGGCGGTGGTGACGGACGAACACGGTGCCCACGCCCCTGATCCGGGCTGGCGCCCCGGCGACCGTGGCCCGCGTACCCG
GGCCGGCACAGCCGCCCAGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MAIARPEKSVNPPAAASARSSGRAPEADLEALRRHVAGDPDAFGELFRAHADRLWSVAFALLQDAEEAADAVQEAMLSAH
RRAADFRGEAAVGTWLHRIVTNAALDRLRRRAVRPTVPMPSAPDGAPYEPADARDAIAEHDTRMDIGAALGMLPVTLRTP
VVLVDVEGRSVAEVAELLDIPVGTVKSRCARGRARLAVLLGHLAPERARRPVAGNQPASPSVCDEGRYDTSAGGPDEPVD
RLVDDQPVEQAGSDRADADGTDPTGTTTRGAAAEPAEMPGAAGVPGPADRTGTTAGRLTRRRR

Sequences:

>Translated_303_residues
MAIARPEKSVNPPAAASARSSGRAPEADLEALRRHVAGDPDAFGELFRAHADRLWSVAFALLQDAEEAADAVQEAMLSAH
RRAADFRGEAAVGTWLHRIVTNAALDRLRRRAVRPTVPMPSAPDGAPYEPADARDAIAEHDTRMDIGAALGMLPVTLRTP
VVLVDVEGRSVAEVAELLDIPVGTVKSRCARGRARLAVLLGHLAPERARRPVAGNQPASPSVCDEGRYDTSAGGPDEPVD
RLVDDQPVEQAGSDRADADGTDPTGTTTRGAAAEPAEMPGAAGVPGPADRTGTTAGRLTRRRR
>Mature_302_residues
AIARPEKSVNPPAAASARSSGRAPEADLEALRRHVAGDPDAFGELFRAHADRLWSVAFALLQDAEEAADAVQEAMLSAHR
RAADFRGEAAVGTWLHRIVTNAALDRLRRRAVRPTVPMPSAPDGAPYEPADARDAIAEHDTRMDIGAALGMLPVTLRTPV
VLVDVEGRSVAEVAELLDIPVGTVKSRCARGRARLAVLLGHLAPERARRPVAGNQPASPSVCDEGRYDTSAGGPDEPVDR
LVDDQPVEQAGSDRADADGTDPTGTTTRGAAAEPAEMPGAAGVPGPADRTGTTAGRLTRRRR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=167, Percent_Identity=31.1377245508982, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 31874; Mature: 31743

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIARPEKSVNPPAAASARSSGRAPEADLEALRRHVAGDPDAFGELFRAHADRLWSVAFA
CCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LLQDAEEAADAVQEAMLSAHRRAADFRGEAAVGTWLHRIVTNAALDRLRRRAVRPTVPMP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SAPDGAPYEPADARDAIAEHDTRMDIGAALGMLPVTLRTPVVLVDVEGRSVAEVAELLDI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHC
PVGTVKSRCARGRARLAVLLGHLAPERARRPVAGNQPASPSVCDEGRYDTSAGGPDEPVD
CHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
RLVDDQPVEQAGSDRADADGTDPTGTTTRGAAAEPAEMPGAAGVPGPADRTGTTAGRLTR
HHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHH
RRR
CCC
>Mature Secondary Structure 
AIARPEKSVNPPAAASARSSGRAPEADLEALRRHVAGDPDAFGELFRAHADRLWSVAFA
CCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LLQDAEEAADAVQEAMLSAHRRAADFRGEAAVGTWLHRIVTNAALDRLRRRAVRPTVPMP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SAPDGAPYEPADARDAIAEHDTRMDIGAALGMLPVTLRTPVVLVDVEGRSVAEVAELLDI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHC
PVGTVKSRCARGRARLAVLLGHLAPERARRPVAGNQPASPSVCDEGRYDTSAGGPDEPVD
CHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
RLVDDQPVEQAGSDRADADGTDPTGTTTRGAAAEPAEMPGAAGVPGPADRTGTTAGRLTR
HHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHH
RRR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]