| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is pkn1 [H]
Identifier: 158319018
GI number: 158319018
Start: 8922425
End: 8923945
Strand: Direct
Name: pkn1 [H]
Synonym: Franean1_7301
Alternate gene names: 158319018
Gene position: 8922425-8923945 (Clockwise)
Preceding gene: 158319017
Following gene: 158319019
Centisome position: 99.34
GC content: 74.42
Gene sequence:
>1521_bases GTGCGTTCCGGTGCCTTGACCGGCGACCCGACCACCACCCGTGACCCTGCCGGCCCGACGGCCGCTCCTGCCCTCGACGC GGAGGCGCTGGCGGCGGGGCTGGCGGCGGCCCGGGACCGGTCGCTCGCCTACACCGACCTCACCGAGGACGACCTCCTGC GCCAGCACTCGCCACTAATGTCACCGCTGGTCTGGGATCTCGCGCACATCGGCAACTACGAGGAGATCTGGCTGCTGCGC GCCCTGACCGGCGCGGCCGAGCTGCGCCCCGGCCTGGACGACGTCTACGACGCCTTCCGGCACAGCCGGGCCAGCCGGAC CGCGCTGCCGCTGCTCGGCCCGGACGAGGCCCGCGCGTACCTGCGGGACGTCCGCGGGCGGGCGATGGACGTCCTGACCG GGCTGGACCCCGACCTGCTGCACGCCCCGGAGACGGCCGGCGAGGCCGCCGGACCCGAGGCCGGGAACGGGAACGAGAAC GGGGCCGCGAGCAGGAACGGGGCCGCGAACGGGAACGGTGAGCGGGACGGCGGCGCGGCCGTCCACCGGCGTGCCCGGCT GCTGTCGGGGTCGTTCGTCTACGGCATGGTGATCCAGCACGAGCACCAGCACGACGAGACGATGCTCGCGACGCTGCAGC TGCGCGCGGGCCCGCCCGTCCTGGCCGACCCGCGGGCGGCGCCGCCATCCCCGGCCGGGCCGGTGGACGAGGCGGCCGAG GTCCTGGTGCCGGCCGGCGAGTTCACCATGGGCACGTCGACCGAGCCGTGGGCGTACGACAACGAGCGGCCGGCGCACCG GGTGTTCCTGCCCGCCTTCCGCCTCGGCCGCTACCCGGTCACCAACCGGGCCCACCTGGCGTTCATCGCGGACGGCGGCT ACGCCGACGAGCGGCTCTGGTCCGCCGAGGGCTGGGCGTGGCGCTGCCAGGAGGGCCTGACGGCGCCGCTTTTCTGGTCA CGCGACGGCGACGTCTGGACACGCCGCCGATTCGGGCGGGTCGAACCGGTGCCTCTCGACGAGCCCGTGCAGCACGTGTG CTGGTATGAAGCCGAGGCCCACGCCCGCTGGGCCGGACGACGGCTGCCCACGGAGGCCGAGTGGGAGAAGGCGTGTGCGC ACGACCCCGTCACCGGGCGTTCACGACGGTATCCATGGGGCGACACCGACCCGACTCCCGAGCTTGCGAACCTGGGGCAC CGCACTGCGCGGCCCGCACCGGTGGGCGGCAGGCCGGCCGGCGCGAGCCCGTACGGCGCCGAACAGATGATCGGGGACGT CTGGGAATGGACCGGCGGCGGGTTCACCCCTTATCCGGGCTTCGCGTCGTTCCCGTACCGGGAGTACAGCGAGGTCTTCT ATCCTCGCGATGCGGCCCCGGCCCGGTTCCGGGTGCTGCGCGGCGGCTCCTGGGCGACCGATCCCAGCGCCGTCCGCTCC ACGTTCCGCAACTGGGACTTTCCGATCCGACGGCAGATCTTCGCCGGGTTCCGGCTCGCCCGCGACGCCGACACCCCCTG A
Upstream 100 bases:
>100_bases CCAACCGTTACACGCGGCGGGGGCGCTCCCCGGCCGACGACCTGAACGCGCGTTTCGAGGCGCGCGGGCCGGCTGAGCTG CTGCGCGAGGAGGCGTCCCA
Downstream 100 bases:
>100_bases CCCCGCCGCTCCAAGCCCGCACCCGCGCCCGCACCCGAACCCGAACCCGAACCCGCCCGTACCGGTGTACCGGCGTCCCC ACCTGTGCCCGTGGCCTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MRSGALTGDPTTTRDPAGPTAAPALDAEALAAGLAAARDRSLAYTDLTEDDLLRQHSPLMSPLVWDLAHIGNYEEIWLLR ALTGAAELRPGLDDVYDAFRHSRASRTALPLLGPDEARAYLRDVRGRAMDVLTGLDPDLLHAPETAGEAAGPEAGNGNEN GAASRNGAANGNGERDGGAAVHRRARLLSGSFVYGMVIQHEHQHDETMLATLQLRAGPPVLADPRAAPPSPAGPVDEAAE VLVPAGEFTMGTSTEPWAYDNERPAHRVFLPAFRLGRYPVTNRAHLAFIADGGYADERLWSAEGWAWRCQEGLTAPLFWS RDGDVWTRRRFGRVEPVPLDEPVQHVCWYEAEAHARWAGRRLPTEAEWEKACAHDPVTGRSRRYPWGDTDPTPELANLGH RTARPAPVGGRPAGASPYGAEQMIGDVWEWTGGGFTPYPGFASFPYREYSEVFYPRDAAPARFRVLRGGSWATDPSAVRS TFRNWDFPIRRQIFAGFRLARDADTP
Sequences:
>Translated_506_residues MRSGALTGDPTTTRDPAGPTAAPALDAEALAAGLAAARDRSLAYTDLTEDDLLRQHSPLMSPLVWDLAHIGNYEEIWLLR ALTGAAELRPGLDDVYDAFRHSRASRTALPLLGPDEARAYLRDVRGRAMDVLTGLDPDLLHAPETAGEAAGPEAGNGNEN GAASRNGAANGNGERDGGAAVHRRARLLSGSFVYGMVIQHEHQHDETMLATLQLRAGPPVLADPRAAPPSPAGPVDEAAE VLVPAGEFTMGTSTEPWAYDNERPAHRVFLPAFRLGRYPVTNRAHLAFIADGGYADERLWSAEGWAWRCQEGLTAPLFWS RDGDVWTRRRFGRVEPVPLDEPVQHVCWYEAEAHARWAGRRLPTEAEWEKACAHDPVTGRSRRYPWGDTDPTPELANLGH RTARPAPVGGRPAGASPYGAEQMIGDVWEWTGGGFTPYPGFASFPYREYSEVFYPRDAAPARFRVLRGGSWATDPSAVRS TFRNWDFPIRRQIFAGFRLARDADTP >Mature_506_residues MRSGALTGDPTTTRDPAGPTAAPALDAEALAAGLAAARDRSLAYTDLTEDDLLRQHSPLMSPLVWDLAHIGNYEEIWLLR ALTGAAELRPGLDDVYDAFRHSRASRTALPLLGPDEARAYLRDVRGRAMDVLTGLDPDLLHAPETAGEAAGPEAGNGNEN GAASRNGAANGNGERDGGAAVHRRARLLSGSFVYGMVIQHEHQHDETMLATLQLRAGPPVLADPRAAPPSPAGPVDEAAE VLVPAGEFTMGTSTEPWAYDNERPAHRVFLPAFRLGRYPVTNRAHLAFIADGGYADERLWSAEGWAWRCQEGLTAPLFWS RDGDVWTRRRFGRVEPVPLDEPVQHVCWYEAEAHARWAGRRLPTEAEWEKACAHDPVTGRSRRYPWGDTDPTPELANLGH RTARPAPVGGRPAGASPYGAEQMIGDVWEWTGGGFTPYPGFASFPYREYSEVFYPRDAAPARFRVLRGGSWATDPSAVRS TFRNWDFPIRRQIFAGFRLARDADTP
Specific function: Together with the serine/threonine kinase pknD, may play a role in the specific interactions with host proteins during intracellular growth [H]
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 protein kinase domain [H]
Homologues:
Organism=Homo sapiens, GI257470975, Length=281, Percent_Identity=31.3167259786477, Blast_Score=95, Evalue=1e-19, Organism=Homo sapiens, GI38202250, Length=289, Percent_Identity=30.4498269896194, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI257470977, Length=215, Percent_Identity=33.0232558139535, Blast_Score=83, Evalue=7e-16, Organism=Homo sapiens, GI194248087, Length=294, Percent_Identity=29.9319727891156, Blast_Score=81, Evalue=3e-15, Organism=Homo sapiens, GI194248088, Length=299, Percent_Identity=30.1003344481605, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI226437577, Length=183, Percent_Identity=35.5191256830601, Blast_Score=66, Evalue=9e-11, Organism=Drosophila melanogaster, GI20130397, Length=222, Percent_Identity=29.2792792792793, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016187 - InterPro: IPR011009 - InterPro: IPR000719 - InterPro: IPR017442 - InterPro: IPR005532 [H]
Pfam domain/function: PF03781 DUF323; PF00069 Pkinase [H]
EC number: =2.7.11.1 [H]
Molecular weight: Translated: 55349; Mature: 55349
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSGALTGDPTTTRDPAGPTAAPALDAEALAAGLAAARDRSLAYTDLTEDDLLRQHSPLM CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCHHH SPLVWDLAHIGNYEEIWLLRALTGAAELRPGLDDVYDAFRHSRASRTALPLLGPDEARAY HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH LRDVRGRAMDVLTGLDPDLLHAPETAGEAAGPEAGNGNENGAASRNGAANGNGERDGGAA HHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH VHRRARLLSGSFVYGMVIQHEHQHDETMLATLQLRAGPPVLADPRAAPPSPAGPVDEAAE HHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH VLVPAGEFTMGTSTEPWAYDNERPAHRVFLPAFRLGRYPVTNRAHLAFIADGGYADERLW HEECCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCEEEEEECCCCCHHHEE SAEGWAWRCQEGLTAPLFWSRDGDVWTRRRFGRVEPVPLDEPVQHVCWYEAEAHARWAGR CCCCCEEECCCCCCCCEEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHCC RLPTEAEWEKACAHDPVTGRSRRYPWGDTDPTPELANLGHRTARPAPVGGRPAGASPYGA CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCH EQMIGDVWEWTGGGFTPYPGFASFPYREYSEVFYPRDAAPARFRVLRGGSWATDPSAVRS HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHH TFRNWDFPIRRQIFAGFRLARDADTP HHHCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRSGALTGDPTTTRDPAGPTAAPALDAEALAAGLAAARDRSLAYTDLTEDDLLRQHSPLM CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCHHH SPLVWDLAHIGNYEEIWLLRALTGAAELRPGLDDVYDAFRHSRASRTALPLLGPDEARAY HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH LRDVRGRAMDVLTGLDPDLLHAPETAGEAAGPEAGNGNENGAASRNGAANGNGERDGGAA HHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH VHRRARLLSGSFVYGMVIQHEHQHDETMLATLQLRAGPPVLADPRAAPPSPAGPVDEAAE HHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH VLVPAGEFTMGTSTEPWAYDNERPAHRVFLPAFRLGRYPVTNRAHLAFIADGGYADERLW HEECCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCEEEEEECCCCCHHHEE SAEGWAWRCQEGLTAPLFWSRDGDVWTRRRFGRVEPVPLDEPVQHVCWYEAEAHARWAGR CCCCCEEECCCCCCCCEEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHCC RLPTEAEWEKACAHDPVTGRSRRYPWGDTDPTPELANLGHRTARPAPVGGRPAGASPYGA CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCH EQMIGDVWEWTGGGFTPYPGFASFPYREYSEVFYPRDAAPARFRVLRGGSWATDPSAVRS HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHH TFRNWDFPIRRQIFAGFRLARDADTP HHHCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10192388; 10684935; 10871362 [H]