| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318872
Identifier: 158318872
GI number: 158318872
Start: 8735029
End: 8735535
Strand: Reverse
Name: 158318872
Synonym: Franean1_7153
Alternate gene names: NA
Gene position: 8735535-8735029 (Counterclockwise)
Preceding gene: 158318873
Following gene: 158318871
Centisome position: 97.26
GC content: 71.4
Gene sequence:
>507_bases ATGAGTGAGATCGAGGAGCTGCGCGCCGCTGTCGAGACGCTGGCGGCAAGGGTCCGGCTGCTGGAGGACCAGGTCGAGAT CATGCAGCTCGTCGCCCAGTACGGGCCCGCCGTCGACAGCGGGTCGGCCACCGCCACGGCGGAGCTGTGGACCGAGGACG GCACCTTCGACGCGGTTCCCCACCTGCGGATGCGCGGCCGGAGCGACATCGTCGACATGGTCAACGGCGGCCACCAGCGC CTGATCCAGGGCGGCTGCGGCCACGTCCTGACCGTCCCGCACATCGAGGTCGACGGGGACCAGGCGACCGGCCGCAGCTA CGCGCTCAACATCCGCTGGGATGCCGACGCCGACCGGTTCTGGGTCGCCCGCGTCTCCGCGAACACCTGGCGCTGGACGC GCACACCGCAGGGCTGGCGTATCAGCGAACGGGTCAACGCCAACCTCGACGGCACCCCCGAACACCGCGCCATGCTGGCC CCACACCCGCCTGCCGGTGGCGACTGA
Upstream 100 bases:
>100_bases CGCCGAGGCGCTCAACGCCTCCCGCGACGCCAACGGACCCGTCCGCATCGTCGTCGTGCCCTGAACCGGGTCCCCCGCAC ACGTTCGGAAGGACTGATGG
Downstream 100 bases:
>100_bases CCCGCCCTCGGTGACCGGCCTGTCGGCGGTGACCCGCCGGTCGAGCGCTAGTACACACGCCGTCTGGAGGATCAATGAAG ATCGGATTCGTCGGGCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MSEIEELRAAVETLAARVRLLEDQVEIMQLVAQYGPAVDSGSATATAELWTEDGTFDAVPHLRMRGRSDIVDMVNGGHQR LIQGGCGHVLTVPHIEVDGDQATGRSYALNIRWDADADRFWVARVSANTWRWTRTPQGWRISERVNANLDGTPEHRAMLA PHPPAGGD
Sequences:
>Translated_168_residues MSEIEELRAAVETLAARVRLLEDQVEIMQLVAQYGPAVDSGSATATAELWTEDGTFDAVPHLRMRGRSDIVDMVNGGHQR LIQGGCGHVLTVPHIEVDGDQATGRSYALNIRWDADADRFWVARVSANTWRWTRTPQGWRISERVNANLDGTPEHRAMLA PHPPAGGD >Mature_167_residues SEIEELRAAVETLAARVRLLEDQVEIMQLVAQYGPAVDSGSATATAELWTEDGTFDAVPHLRMRGRSDIVDMVNGGHQRL IQGGCGHVLTVPHIEVDGDQATGRSYALNIRWDADADRFWVARVSANTWRWTRTPQGWRISERVNANLDGTPEHRAMLAP HPPAGGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18535; Mature: 18404
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIEELRAAVETLAARVRLLEDQVEIMQLVAQYGPAVDSGSATATAELWTEDGTFDAVP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC HLRMRGRSDIVDMVNGGHQRLIQGGCGHVLTVPHIEVDGDQATGRSYALNIRWDADADRF CHHHCCCCHHHHHHCCCHHHHHHCCCCCEEECCEEEECCCCCCCCEEEEEEEECCCCCEE WVARVSANTWRWTRTPQGWRISERVNANLDGTPEHRAMLAPHPPAGGD EEEEEECCCEEECCCCCCCEEHHHCCCCCCCCCCCCEEECCCCCCCCC >Mature Secondary Structure SEIEELRAAVETLAARVRLLEDQVEIMQLVAQYGPAVDSGSATATAELWTEDGTFDAVP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC HLRMRGRSDIVDMVNGGHQRLIQGGCGHVLTVPHIEVDGDQATGRSYALNIRWDADADRF CHHHCCCCHHHHHHCCCHHHHHHCCCCCEEECCEEEECCCCCCCCEEEEEEEECCCCCEE WVARVSANTWRWTRTPQGWRISERVNANLDGTPEHRAMLAPHPPAGGD EEEEEECCCEEECCCCCCCEEHHHCCCCCCCCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA