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The map label for this gene is ycdC [C]

Identifier: 158318698

GI number: 158318698

Start: 8492361

End: 8493050

Strand: Direct

Name: ycdC [C]

Synonym: Franean1_6966

Alternate gene names: 158318698

Gene position: 8492361-8493050 (Clockwise)

Preceding gene: 158318697

Following gene: 158318701

Centisome position: 94.55

GC content: 77.1

Gene sequence:

>690_bases
ATGAACACCACTCGGCGGCGCGACGCTGCGCGCAGCCGCCAGGCGCTGCTGGCCGCGGCGGCCGACCTGTTCGCCGAGCG
CGGCTACGCGGGAACCGCGATCCGGTCGGTCGGCGACCGCGCCGGCGTCGATCCGGCGCTCATCGCTCGCTACTTCGGCG
GCAAGGAGGGCCTCTACCAGGCCGTTCTCGCCGCCGACCCGCTCATCGAACAGTCCGCTCCGAGTGCGGACGGCCCACCG
GCCGCCCCGCACGCACCCGTGCCGGCCGCATCCGGGGACGACGGGGCCGGGGACGACGGGGCCGCGGCCGGGACGGTCGC
CGGTCCTCCGGACGAGCCGGCGGCGAGCCCGCTGGCGACAGTGCACGGGATGGTGGACCGGGCGTTCGACAAGTGGACGT
CGACCGGCGTGAGCGCCGCCGCCCAGAACGTCTTCCGCCGGGAGGTCGACGACGCCGCGCGCCAGGCGACCCGCGAGCGG
CTCGACACCGTGCTCGAGCCGCTGCGCGGCGCGGCCGACAGCCCCGACCCGCAGCTGGCCGCCGAGCTGGCTGTCGCTGT
GCTGTTCGGGGTCGGCGTCGCCCGGGACGCCGGGACGCTGACCCGGCTGTCCGCGGTGTCGGTCGACGAGCTGCGCGCCC
CCCTGACCGCGGCCCTCGTGGCCGCGCTGGGCATCACGGACTGCCAGTAG

Upstream 100 bases:

>100_bases
GCCCGTTGGGGGCGGCGCGCCGGACGGAACTGGAGACACTGGAGGAGGAATCGGCGGGCTCCACCGCCGCGGGACTCGTC
ATGGCGGAGGATGTCCGGTC

Downstream 100 bases:

>100_bases
AGGCAACCCGACGGTGCGGAGCTCAGAGCACCGCGCCCGGGTTGAGGATGCCGAGCGGGTCGAGGGCGTCCTTGATGCGC
TGGTTCAGCCGCAGGACGTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Regulatory Protein TetR

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MNTTRRRDAARSRQALLAAAADLFAERGYAGTAIRSVGDRAGVDPALIARYFGGKEGLYQAVLAADPLIEQSAPSADGPP
AAPHAPVPAASGDDGAGDDGAAAGTVAGPPDEPAASPLATVHGMVDRAFDKWTSTGVSAAAQNVFRREVDDAARQATRER
LDTVLEPLRGAADSPDPQLAAELAVAVLFGVGVARDAGTLTRLSAVSVDELRAPLTAALVAALGITDCQ

Sequences:

>Translated_229_residues
MNTTRRRDAARSRQALLAAAADLFAERGYAGTAIRSVGDRAGVDPALIARYFGGKEGLYQAVLAADPLIEQSAPSADGPP
AAPHAPVPAASGDDGAGDDGAAAGTVAGPPDEPAASPLATVHGMVDRAFDKWTSTGVSAAAQNVFRREVDDAARQATRER
LDTVLEPLRGAADSPDPQLAAELAVAVLFGVGVARDAGTLTRLSAVSVDELRAPLTAALVAALGITDCQ
>Mature_229_residues
MNTTRRRDAARSRQALLAAAADLFAERGYAGTAIRSVGDRAGVDPALIARYFGGKEGLYQAVLAADPLIEQSAPSADGPP
AAPHAPVPAASGDDGAGDDGAAAGTVAGPPDEPAASPLATVHGMVDRAFDKWTSTGVSAAAQNVFRREVDDAARQATRER
LDTVLEPLRGAADSPDPQLAAELAVAVLFGVGVARDAGTLTRLSAVSVDELRAPLTAALVAALGITDCQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23218; Mature: 23218

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTRRRDAARSRQALLAAAADLFAERGYAGTAIRSVGDRAGVDPALIARYFGGKEGLYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHH
AVLAADPLIEQSAPSADGPPAAPHAPVPAASGDDGAGDDGAAAGTVAGPPDEPAASPLAT
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
VHGMVDRAFDKWTSTGVSAAAQNVFRREVDDAARQATRERLDTVLEPLRGAADSPDPQLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
AELAVAVLFGVGVARDAGTLTRLSAVSVDELRAPLTAALVAALGITDCQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNTTRRRDAARSRQALLAAAADLFAERGYAGTAIRSVGDRAGVDPALIARYFGGKEGLYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHH
AVLAADPLIEQSAPSADGPPAAPHAPVPAASGDDGAGDDGAAAGTVAGPPDEPAASPLAT
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
VHGMVDRAFDKWTSTGVSAAAQNVFRREVDDAARQATRERLDTVLEPLRGAADSPDPQLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
AELAVAVLFGVGVARDAGTLTRLSAVSVDELRAPLTAALVAALGITDCQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA