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The map label for this gene is yfdE [H]

Identifier: 158318645

GI number: 158318645

Start: 8421754

End: 8422944

Strand: Direct

Name: yfdE [H]

Synonym: Franean1_6913

Alternate gene names: 158318645

Gene position: 8421754-8422944 (Clockwise)

Preceding gene: 158318644

Following gene: 158318646

Centisome position: 93.76

GC content: 69.94

Gene sequence:

>1191_bases
ATGCACGCACTGCAGGGCGTTCGAGTTCTCGACCTGGGCACCTACCTCGCGGGGCCGTTCTGCGCCACGGTGCTGGGCGA
GTTCGGCGCGGACATCATCAAGGTCGAGCGCCCCGGCGCTGGGGACAACCTGCGCCGCTTCGGCACCGACACGGACTGTG
GCGACACCCTGGTCTGGCTCAGCGAGAGCCGCAACAAGCGGTCGGTGACCCTCAACCTCGGCGATCCCCGTGGCCTCGAG
ATCCTCCGGGAGCTCATCGCCACCGCCGACATCGTGATCGAGAACTTCCGCCCCGGCGTCCTCGAGCGCTGGGGGCTCGG
CCCCGAGGTGATCCAGGAGCTGAACCCGCGCGCGATCCTGCTGCGGGTCTCCGCCTACGGCCAGTCGGGGCCCAACCGGG
ACCTCCCCGGCTTCGCCCGGATCGCCCACGCCTTCTCCGGGCTCGCCTACCTGGCCGGCGAGCCGGGCGGGACACCCGTC
ACCCCGGGCTCGACCTCGCTGGCCGACTACATGACGGGGCTGTACGGCGTCATCGGCGTGCTGATGGCCCTGCGCGCCCG
GGAGAGCACCGGGAAGGGCCAGGTCGTCGACCTGGCCCTGTACGAGACGATCTTCCGTGCGCTCGACGAGATCGCGCCCG
CCTACCAGCAGTTCGGCTTCGTCCGCGAGCGGATGGGCGCGGACACCGTCAACGTGCTCCCGCACAGCCACTACCGGACC
AAGGACGACCGCTGGATCGCGATTGCCTGCTCGAACGACGACATGTTCGCCCGGCTGGCCCGGGCTATGGAACGCCCCGA
GCTGGCCGACGAGGACGAACTGGGCCCGAAGGCGAAACGCCTGGCCGCCCGGGACCTGGTCAACGAGCTGGTCGGCGGGT
GGGTCGGGTCGCTGCCGTGCGACGAGGTGCTGGCCCGGTGCAAGCAGGCCCAGGTTCCGGCCGGGCAGCTCTACTCCATC
GCCGACATCTTCGACGATCCGCAGTACAAGCACCGCGAGACCATTACCGTCGAGGAATCCCGGATCGGCCCGCTGGCAGT
GCCTGGAGTGATCCCGGCACTCTCCGAAACCCCGGGTGAGATCCGCTGGTTGGGGCCGGAGCTCGGCGCGCACACCGACG
ACGTCCTCACTGAACTACTGAACCGCACCCCGGAGGACATCGCGCGGCTGCGCGCCGACGGAGTGATCTGA

Upstream 100 bases:

>100_bases
CGGCGGCATGGAGCCACTGGACAGACCGTGGGACGCACAGCCCTGGTCGGATTAAGAATCGACCTCGACGTCGAATCGCC
GACCACTGGAGGCTGACGAC

Downstream 100 bases:

>100_bases
CACCAGACGTCGAAGCCCCGGCACAGCGTGAGCTCGCCGGCGGTGGGAACGAAACCATCCCGCGAGAGGGGTTGAAGCCG
ATGGCCATCCAGGAAAAACT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MHALQGVRVLDLGTYLAGPFCATVLGEFGADIIKVERPGAGDNLRRFGTDTDCGDTLVWLSESRNKRSVTLNLGDPRGLE
ILRELIATADIVIENFRPGVLERWGLGPEVIQELNPRAILLRVSAYGQSGPNRDLPGFARIAHAFSGLAYLAGEPGGTPV
TPGSTSLADYMTGLYGVIGVLMALRARESTGKGQVVDLALYETIFRALDEIAPAYQQFGFVRERMGADTVNVLPHSHYRT
KDDRWIAIACSNDDMFARLARAMERPELADEDELGPKAKRLAARDLVNELVGGWVGSLPCDEVLARCKQAQVPAGQLYSI
ADIFDDPQYKHRETITVEESRIGPLAVPGVIPALSETPGEIRWLGPELGAHTDDVLTELLNRTPEDIARLRADGVI

Sequences:

>Translated_396_residues
MHALQGVRVLDLGTYLAGPFCATVLGEFGADIIKVERPGAGDNLRRFGTDTDCGDTLVWLSESRNKRSVTLNLGDPRGLE
ILRELIATADIVIENFRPGVLERWGLGPEVIQELNPRAILLRVSAYGQSGPNRDLPGFARIAHAFSGLAYLAGEPGGTPV
TPGSTSLADYMTGLYGVIGVLMALRARESTGKGQVVDLALYETIFRALDEIAPAYQQFGFVRERMGADTVNVLPHSHYRT
KDDRWIAIACSNDDMFARLARAMERPELADEDELGPKAKRLAARDLVNELVGGWVGSLPCDEVLARCKQAQVPAGQLYSI
ADIFDDPQYKHRETITVEESRIGPLAVPGVIPALSETPGEIRWLGPELGAHTDDVLTELLNRTPEDIARLRADGVI
>Mature_396_residues
MHALQGVRVLDLGTYLAGPFCATVLGEFGADIIKVERPGAGDNLRRFGTDTDCGDTLVWLSESRNKRSVTLNLGDPRGLE
ILRELIATADIVIENFRPGVLERWGLGPEVIQELNPRAILLRVSAYGQSGPNRDLPGFARIAHAFSGLAYLAGEPGGTPV
TPGSTSLADYMTGLYGVIGVLMALRARESTGKGQVVDLALYETIFRALDEIAPAYQQFGFVRERMGADTVNVLPHSHYRT
KDDRWIAIACSNDDMFARLARAMERPELADEDELGPKAKRLAARDLVNELVGGWVGSLPCDEVLARCKQAQVPAGQLYSI
ADIFDDPQYKHRETITVEESRIGPLAVPGVIPALSETPGEIRWLGPELGAHTDDVLTELLNRTPEDIARLRADGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=33.0808080808081, Blast_Score=222, Evalue=4e-58,
Organism=Homo sapiens, GI300863124, Length=422, Percent_Identity=31.042654028436, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=29.2929292929293, Blast_Score=173, Evalue=2e-43,
Organism=Homo sapiens, GI13376042, Length=422, Percent_Identity=27.2511848341232, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI266456254, Length=404, Percent_Identity=29.7029702970297, Blast_Score=152, Evalue=8e-37,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=29.7029702970297, Blast_Score=151, Evalue=8e-37,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=34.8484848484849, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI266458397, Length=262, Percent_Identity=35.1145038167939, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI266458395, Length=153, Percent_Identity=41.1764705882353, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI42822893, Length=153, Percent_Identity=41.1764705882353, Blast_Score=110, Evalue=2e-24,
Organism=Escherichia coli, GI87082093, Length=332, Percent_Identity=33.1325301204819, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=29.0167865707434, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1786222, Length=410, Percent_Identity=27.8048780487805, Blast_Score=120, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI32564160, Length=263, Percent_Identity=24.7148288973384, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=248, Percent_Identity=27.8225806451613, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24648431, Length=404, Percent_Identity=33.4158415841584, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI24585488, Length=366, Percent_Identity=27.3224043715847, Blast_Score=118, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43122; Mature: 43122

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHALQGVRVLDLGTYLAGPFCATVLGEFGADIIKVERPGAGDNLRRFGTDTDCGDTLVWL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCEEEEE
SESRNKRSVTLNLGDPRGLEILRELIATADIVIENFRPGVLERWGLGPEVIQELNPRAIL
ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCEEE
LRVSAYGQSGPNRDLPGFARIAHAFSGLAYLAGEPGGTPVTPGSTSLADYMTGLYGVIGV
EEEEECCCCCCCCCCCHHHHHHHHHHCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LMALRARESTGKGQVVDLALYETIFRALDEIAPAYQQFGFVRERMGADTVNVLPHSHYRT
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
KDDRWIAIACSNDDMFARLARAMERPELADEDELGPKAKRLAARDLVNELVGGWVGSLPC
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
DEVLARCKQAQVPAGQLYSIADIFDDPQYKHRETITVEESRIGPLAVPGVIPALSETPGE
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCHHHHHCCCCCC
IRWLGPELGAHTDDVLTELLNRTPEDIARLRADGVI
EEEECCHHCCCHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MHALQGVRVLDLGTYLAGPFCATVLGEFGADIIKVERPGAGDNLRRFGTDTDCGDTLVWL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCEEEEE
SESRNKRSVTLNLGDPRGLEILRELIATADIVIENFRPGVLERWGLGPEVIQELNPRAIL
ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCEEE
LRVSAYGQSGPNRDLPGFARIAHAFSGLAYLAGEPGGTPVTPGSTSLADYMTGLYGVIGV
EEEEECCCCCCCCCCCHHHHHHHHHHCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LMALRARESTGKGQVVDLALYETIFRALDEIAPAYQQFGFVRERMGADTVNVLPHSHYRT
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
KDDRWIAIACSNDDMFARLARAMERPELADEDELGPKAKRLAARDLVNELVGGWVGSLPC
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
DEVLARCKQAQVPAGQLYSIADIFDDPQYKHRETITVEESRIGPLAVPGVIPALSETPGE
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCHHHHHCCCCCC
IRWLGPELGAHTDDVLTELLNRTPEDIARLRADGVI
EEEECCHHCCCHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]