Click here to switch to the map view.

The map label for this gene is ndoB [H]

Identifier: 158318646

GI number: 158318646

Start: 8423025

End: 8424320

Strand: Direct

Name: ndoB [H]

Synonym: Franean1_6914

Alternate gene names: 158318646

Gene position: 8423025-8424320 (Clockwise)

Preceding gene: 158318645

Following gene: 158318647

Centisome position: 93.78

GC content: 65.59

Gene sequence:

>1296_bases
ATGGCCATCCAGGAAAAACTTGCGACCGGTAGAGGCAAGTACACACCGGGGTACCCGAACCTCGACACCGGGCCGGTCGA
CTACGAGGACTCGATCTCCGAAGAGTTCTTCCAGGCCGAGCGCGAGGCGATCTTCAAGCGGACCTGGCTGAAGGTCGGCC
GGATGGAGCAGCTGCCCCGCAACGGCACGTTCTTCACCCGCGAGTTCGTCGGCCTGGGGTCGATCGTGATCACCCGGCAC
ACCGACGGCGAGGTGTACGCGCTGCACAACATCTGCGCGCACCGCGGCAACAAGGTCGTCTGGCAGGAGCACCCGACCAA
CGAGACCCAGGGCAGCGCCCGGCAGTTCGCCTGCAAGTACCACGGCTGGCGCTACGGCCTCGACGGCAAGTGCACCTACG
TCACCAAGCGGAACGAGTTCTTCGAGTCGCTGCCCGACGACGAGCTCGCCATGCCGCAGCTGCGCTGCGAGGTCTTCGCC
GGGTTCATCTTCGTGAACTTCAGCCAGGACGCTCCGCCGCTGCGCCAGTTCCTCGGTGAGAAGCTGGCCACCGAGCTGGA
GAGCTGGCCGTTCGAGAAGTTCACCAACCACTGGTCCTTCCGGACGAAGGTCAAGGGCAACTGGAAGATCGGCATCGACG
CGCTGCTGGAGTGGTACCACCCGGCGTACGTCCACGGGCGGTTCCTCAACACCAACGTGGCCGAGGCGGAGAAGCTCGTC
CCGCCGATGGACTCCTACCATTACGACCTGTTCACCCCGCACATGCTGACCTCGGTGCCCGGCCCGCCGCTGCTGAAGAA
GAAGCAGGGCTCGGTCGGCCCGGCCAAGCGGGACATGAACTGGGCCTACCGGCTGTTCCGCGCCGGCCTGTTCGGCCCGG
ACGACGTCCGCGAGGACCTCGGCCACCTCACCCCGGACCGCAACCCCGGCAACGTCCAGTCCTGGAGCAACGACCAGTAC
TGGCTGTTCCCGAACCTGTCGGTCCAGCTCTGGGGCCGCGGGTACTACATCACCTACCAGTACATCCCGGAGACGGTGGG
CACCCACGCCTACGAGGTCGACATCTACTTCCCGGAACCGAAGACCGCCTCCGAGCGCCTCGCCCAGGAGCTCGTCGTCG
ACAGCACCATCGAGTTCGCGATGCAGGACACGAACACGGTGGAGGCGACCTGGTCGCAGCTCAACAACCGCGCGCTGCAG
ACGTTCCACCTGTCCGACATGGAGCTGATGATCCGTCAGTTCCACAAGGTTGTCCGGGACGCCGTCGCGGCGCACCAGGC
CGGCAGCGAGAAGTAG

Upstream 100 bases:

>100_bases
GCGCCGACGGAGTGATCTGACACCAGACGTCGAAGCCCCGGCACAGCGTGAGCTCGCCGGCGGTGGGAACGAAACCATCC
CGCGAGAGGGGTTGAAGCCG

Downstream 100 bases:

>100_bases
AGGAACCCCTCGACATGACCACCACTGTGGACACATCCCTGCCCGAGCGGTTCCGCGCCCTCGAGCCGTGGGTCGCCGAC
TGGAACCTGGCGACCCGGGT

Product: Rieske (2Fe-2S) domain-containing protein

Products: NA

Alternate protein names: Naphthalene 1,2-dioxygenase ISP alpha [H]

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MAIQEKLATGRGKYTPGYPNLDTGPVDYEDSISEEFFQAEREAIFKRTWLKVGRMEQLPRNGTFFTREFVGLGSIVITRH
TDGEVYALHNICAHRGNKVVWQEHPTNETQGSARQFACKYHGWRYGLDGKCTYVTKRNEFFESLPDDELAMPQLRCEVFA
GFIFVNFSQDAPPLRQFLGEKLATELESWPFEKFTNHWSFRTKVKGNWKIGIDALLEWYHPAYVHGRFLNTNVAEAEKLV
PPMDSYHYDLFTPHMLTSVPGPPLLKKKQGSVGPAKRDMNWAYRLFRAGLFGPDDVREDLGHLTPDRNPGNVQSWSNDQY
WLFPNLSVQLWGRGYYITYQYIPETVGTHAYEVDIYFPEPKTASERLAQELVVDSTIEFAMQDTNTVEATWSQLNNRALQ
TFHLSDMELMIRQFHKVVRDAVAAHQAGSEK

Sequences:

>Translated_431_residues
MAIQEKLATGRGKYTPGYPNLDTGPVDYEDSISEEFFQAEREAIFKRTWLKVGRMEQLPRNGTFFTREFVGLGSIVITRH
TDGEVYALHNICAHRGNKVVWQEHPTNETQGSARQFACKYHGWRYGLDGKCTYVTKRNEFFESLPDDELAMPQLRCEVFA
GFIFVNFSQDAPPLRQFLGEKLATELESWPFEKFTNHWSFRTKVKGNWKIGIDALLEWYHPAYVHGRFLNTNVAEAEKLV
PPMDSYHYDLFTPHMLTSVPGPPLLKKKQGSVGPAKRDMNWAYRLFRAGLFGPDDVREDLGHLTPDRNPGNVQSWSNDQY
WLFPNLSVQLWGRGYYITYQYIPETVGTHAYEVDIYFPEPKTASERLAQELVVDSTIEFAMQDTNTVEATWSQLNNRALQ
TFHLSDMELMIRQFHKVVRDAVAAHQAGSEK
>Mature_430_residues
AIQEKLATGRGKYTPGYPNLDTGPVDYEDSISEEFFQAEREAIFKRTWLKVGRMEQLPRNGTFFTREFVGLGSIVITRHT
DGEVYALHNICAHRGNKVVWQEHPTNETQGSARQFACKYHGWRYGLDGKCTYVTKRNEFFESLPDDELAMPQLRCEVFAG
FIFVNFSQDAPPLRQFLGEKLATELESWPFEKFTNHWSFRTKVKGNWKIGIDALLEWYHPAYVHGRFLNTNVAEAEKLVP
PMDSYHYDLFTPHMLTSVPGPPLLKKKQGSVGPAKRDMNWAYRLFRAGLFGPDDVREDLGHLTPDRNPGNVQSWSNDQYW
LFPNLSVQLWGRGYYITYQYIPETVGTHAYEVDIYFPEPKTASERLAQELVVDSTIEFAMQDTNTVEATWSQLNNRALQT
FHLSDMELMIRQFHKVVRDAVAAHQAGSEK

Specific function: Component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788103, Length=197, Percent_Identity=29.4416243654822, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1788888, Length=148, Percent_Identity=33.1081081081081, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR015879
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]

EC number: =1.14.12.12 [H]

Molecular weight: Translated: 49728; Mature: 49597

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQEKLATGRGKYTPGYPNLDTGPVDYEDSISEEFFQAEREAIFKRTWLKVGRMEQLPR
CCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NGTFFTREFVGLGSIVITRHTDGEVYALHNICAHRGNKVVWQEHPTNETQGSARQFACKY
CCCEEEHHHHCCCEEEEEECCCCCEEEHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH
HGWRYGLDGKCTYVTKRNEFFESLPDDELAMPQLRCEVFAGFIFVNFSQDAPPLRQFLGE
CCEEECCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHEEEEEEEEECCCCCHHHHHHHH
KLATELESWPFEKFTNHWSFRTKVKGNWKIGIDALLEWYHPAYVHGRFLNTNVAEAEKLV
HHHHHHHCCCHHHHHCCCEEEEEECCCEEECHHHHHHHHCCHHEECEEECCCHHHHHHCC
PPMDSYHYDLFTPHMLTSVPGPPLLKKKQGSVGPAKRDMNWAYRLFRAGLFGPDDVREDL
CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
GHLTPDRNPGNVQSWSNDQYWLFPNLSVQLWGRGYYITYQYIPETVGTHAYEVDIYFPEP
HCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEEEECCHHHCCEEEEEEEEECCC
KTASERLAQELVVDSTIEFAMQDTNTVEATWSQLNNRALQTFHLSDMELMIRQFHKVVRD
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHEEEEECCHHHHHHHHHHHHHHH
AVAAHQAGSEK
HHHHHHCCCCC
>Mature Secondary Structure 
AIQEKLATGRGKYTPGYPNLDTGPVDYEDSISEEFFQAEREAIFKRTWLKVGRMEQLPR
CCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NGTFFTREFVGLGSIVITRHTDGEVYALHNICAHRGNKVVWQEHPTNETQGSARQFACKY
CCCEEEHHHHCCCEEEEEECCCCCEEEHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH
HGWRYGLDGKCTYVTKRNEFFESLPDDELAMPQLRCEVFAGFIFVNFSQDAPPLRQFLGE
CCEEECCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHEEEEEEEEECCCCCHHHHHHHH
KLATELESWPFEKFTNHWSFRTKVKGNWKIGIDALLEWYHPAYVHGRFLNTNVAEAEKLV
HHHHHHHCCCHHHHHCCCEEEEEECCCEEECHHHHHHHHCCHHEECEEECCCHHHHHHCC
PPMDSYHYDLFTPHMLTSVPGPPLLKKKQGSVGPAKRDMNWAYRLFRAGLFGPDDVREDL
CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
GHLTPDRNPGNVQSWSNDQYWLFPNLSVQLWGRGYYITYQYIPETVGTHAYEVDIYFPEP
HCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEEEECCHHHCCEEEEEEEEECCC
KTASERLAQELVVDSTIEFAMQDTNTVEATWSQLNNRALQTFHLSDMELMIRQFHKVVRD
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHEEEEECCHHHHHHHHHHHHHHH
AVAAHQAGSEK
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3243438; 8973308; 8486285; 9634695 [H]