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The map label for this gene is 158318359

Identifier: 158318359

GI number: 158318359

Start: 8056687

End: 8057916

Strand: Direct

Name: 158318359

Synonym: Franean1_6624

Alternate gene names: NA

Gene position: 8056687-8057916 (Clockwise)

Preceding gene: 158318358

Following gene: 158318361

Centisome position: 89.7

GC content: 71.3

Gene sequence:

>1230_bases
ATGATCCCAGTTGAACCCCTCGGCGGGGGCCAGTGGCGCGAGCTCGCGCGACAGGCCCTCGCCCGGCTGCTGCGCAGCCA
TGGCAGCGCCCAGTTCGACCTGTGCGAAGACGCCGTCCAGGAGGCGCTCCTGCAGGCGTACCAACAGTGGCCGGCGCGGT
TTCCGGACGACCCGTTGGGCTGGCTGATCGCTACCGCCCGCCGCCGGTATGCCGACCGTGCCCGCACTGACGCCCGGCGC
CGACACCGCGAGGCGCGCGTCGCGTCGTTGCAGGCTCCGGTGATGCCGGAGGCCGTTCACCGGGACGATTCGCTGCTGGT
CCTCCAGCTGTGTTGCCACCCCGACCTGCCCCGCTCCGGACAGGTAGCGCTGACCCTCCGGGCGGTCGCCGGGCTGACCA
CCGCCCAGATCGCCAACGTCTACCAGCTCCCCGAGCGCACCATCGCCCAACGGATCACCCGGGCCAAACGCCGCGTCAGC
GAACTCGGCCGGCCGCTGCCGCCGCCCGGACACGCGGGCGAGGGCGTCACTGCCGTACTCGACGTGCTCTACGTGATGTT
CGCCGAGGCGCACCACACGACCGCCGGAGCGCCTCCCCGCGACGCGGGTCTCGCCGCCGAGGCGATTCGCCTGGCTCGGC
TCCTTCGTCGCAGCGTCCCTGAGTCCACCGAGACCACCGGGCTTCTCGCGCTGATGCTGCTCACCGAGGCCCGCCACCCA
GCCCGGGTGGCGCAGGACGGGCACCTGACGTCACTCGACGAGCAGGATCGGTCGCTGTGGGACCAGGAGCTGATCAACGA
AGGGATCGCGCTCGTCGAGCAAGCCGCCCGGGGTGCCGAACCCAGCCCTTACCTGCTCCAGGCCTGCATCGCGGCTCTGC
ATGCCGAAGCCCCCGACATCGCGACAACCGACTGGGACGAGATCCTCGCGCTCTACCGGCTTCTTGAGATCGTTACCGGC
CACCAGAACCCCACGGTCACCCTCAACAGCATCGTCGCCCAGGCCATGGTCGACGGCATCGATGTCGCCCTCGCCCGGAT
CGACGCGCTGGAAGCCGACCACCCTGGCCTTCCCCGCATCGACTCCGTACGCGCCCACCTCCTGGAGCGGGCCGGCAGGA
CGGACGACGCGGCCGGGGCCTACCGGCGAGCCATCGTCGGCACCGTCAGCCTCGCCGAGCAACGCCACCTCAGGCGACGT
CTACGCCGCCTGTCTGGCGCGCACGTGTGA

Upstream 100 bases:

>100_bases
AGGCCCGGGCGGTGGAGCTGGCCCTGCAGATCCCCGATGCCAACATTCCCGGCCTCGCTCTCGAGCTTCGGCCGGTGATG
TTCGCCGATCTGGGAGAGGG

Downstream 100 bases:

>100_bases
CGCGCGGACCAGCGATGTTCGAGTTCTGGCGGCGCGGGTTCGACGCCGTCTCCGTGGCGGAGCTGACCGCGCGCTCGATC
CCGCCGCCGTCGCCGCGTCA

Product: RNA polymerase sigma 70 family subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MIPVEPLGGGQWRELARQALARLLRSHGSAQFDLCEDAVQEALLQAYQQWPARFPDDPLGWLIATARRRYADRARTDARR
RHREARVASLQAPVMPEAVHRDDSLLVLQLCCHPDLPRSGQVALTLRAVAGLTTAQIANVYQLPERTIAQRITRAKRRVS
ELGRPLPPPGHAGEGVTAVLDVLYVMFAEAHHTTAGAPPRDAGLAAEAIRLARLLRRSVPESTETTGLLALMLLTEARHP
ARVAQDGHLTSLDEQDRSLWDQELINEGIALVEQAARGAEPSPYLLQACIAALHAEAPDIATTDWDEILALYRLLEIVTG
HQNPTVTLNSIVAQAMVDGIDVALARIDALEADHPGLPRIDSVRAHLLERAGRTDDAAGAYRRAIVGTVSLAEQRHLRRR
LRRLSGAHV

Sequences:

>Translated_409_residues
MIPVEPLGGGQWRELARQALARLLRSHGSAQFDLCEDAVQEALLQAYQQWPARFPDDPLGWLIATARRRYADRARTDARR
RHREARVASLQAPVMPEAVHRDDSLLVLQLCCHPDLPRSGQVALTLRAVAGLTTAQIANVYQLPERTIAQRITRAKRRVS
ELGRPLPPPGHAGEGVTAVLDVLYVMFAEAHHTTAGAPPRDAGLAAEAIRLARLLRRSVPESTETTGLLALMLLTEARHP
ARVAQDGHLTSLDEQDRSLWDQELINEGIALVEQAARGAEPSPYLLQACIAALHAEAPDIATTDWDEILALYRLLEIVTG
HQNPTVTLNSIVAQAMVDGIDVALARIDALEADHPGLPRIDSVRAHLLERAGRTDDAAGAYRRAIVGTVSLAEQRHLRRR
LRRLSGAHV
>Mature_409_residues
MIPVEPLGGGQWRELARQALARLLRSHGSAQFDLCEDAVQEALLQAYQQWPARFPDDPLGWLIATARRRYADRARTDARR
RHREARVASLQAPVMPEAVHRDDSLLVLQLCCHPDLPRSGQVALTLRAVAGLTTAQIANVYQLPERTIAQRITRAKRRVS
ELGRPLPPPGHAGEGVTAVLDVLYVMFAEAHHTTAGAPPRDAGLAAEAIRLARLLRRSVPESTETTGLLALMLLTEARHP
ARVAQDGHLTSLDEQDRSLWDQELINEGIALVEQAARGAEPSPYLLQACIAALHAEAPDIATTDWDEILALYRLLEIVTG
HQNPTVTLNSIVAQAMVDGIDVALARIDALEADHPGLPRIDSVRAHLLERAGRTDDAAGAYRRAIVGTVSLAEQRHLRRR
LRRLSGAHV

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 44885; Mature: 44885

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPVEPLGGGQWRELARQALARLLRSHGSAQFDLCEDAVQEALLQAYQQWPARFPDDPLG
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
WLIATARRRYADRARTDARRRHREARVASLQAPVMPEAVHRDDSLLVLQLCCHPDLPRSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHCCCCCCCCC
QVALTLRAVAGLTTAQIANVYQLPERTIAQRITRAKRRVSELGRPLPPPGHAGEGVTAVL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
DVLYVMFAEAHHTTAGAPPRDAGLAAEAIRLARLLRRSVPESTETTGLLALMLLTEARHP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
ARVAQDGHLTSLDEQDRSLWDQELINEGIALVEQAARGAEPSPYLLQACIAALHAEAPDI
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
ATTDWDEILALYRLLEIVTGHQNPTVTLNSIVAQAMVDGIDVALARIDALEADHPGLPRI
CCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DSVRAHLLERAGRTDDAAGAYRRAIVGTVSLAEQRHLRRRLRRLSGAHV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIPVEPLGGGQWRELARQALARLLRSHGSAQFDLCEDAVQEALLQAYQQWPARFPDDPLG
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
WLIATARRRYADRARTDARRRHREARVASLQAPVMPEAVHRDDSLLVLQLCCHPDLPRSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHCCCCCCCCC
QVALTLRAVAGLTTAQIANVYQLPERTIAQRITRAKRRVSELGRPLPPPGHAGEGVTAVL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
DVLYVMFAEAHHTTAGAPPRDAGLAAEAIRLARLLRRSVPESTETTGLLALMLLTEARHP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
ARVAQDGHLTSLDEQDRSLWDQELINEGIALVEQAARGAEPSPYLLQACIAALHAEAPDI
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
ATTDWDEILALYRLLEIVTGHQNPTVTLNSIVAQAMVDGIDVALARIDALEADHPGLPRI
CCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DSVRAHLLERAGRTDDAAGAYRRAIVGTVSLAEQRHLRRRLRRLSGAHV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]