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The map label for this gene is ydeS [H]

Identifier: 158318361

GI number: 158318361

Start: 8058923

End: 8059555

Strand: Direct

Name: ydeS [H]

Synonym: Franean1_6626

Alternate gene names: 158318361

Gene position: 8058923-8059555 (Clockwise)

Preceding gene: 158318359

Following gene: 158318362

Centisome position: 89.72

GC content: 73.46

Gene sequence:

>633_bases
ATGTTGGAACAGCGGCCGACTCGCCGGCCCGGCGGGCGCAGCGCCCGCATCCGCGCCGCGGTGCACCAGGCGGCCACCGA
CCTGATCGCCGAACGCGGCTACGGACACTTCACAGTCGGCGACGTCGCCACCCGCGCCACCGTGGCCGACACCAGCATCT
ACCGCCGCTGGGGCACCCTCGAGGCCCTGCTCGCGGATGTGGCGATGACGTGGCTGACCACGACCTCCCCCATCCCCGAC
ACCGGCGGCCTGGAGCAGGACCTGCGCACCTACGCCGCCAACGTCGCCCGCGACCTCACCGGCCCCGACGGGCTGGCAGT
GCTACGCCTGGTCATCGCCCTGTCGTCGGCCGGAGAGGCCGGCGTGCGGGCGCGGGATGCGTTCCTGGCGGAACGCGGCC
GCCAACTACAGGGCATGCTGGATCGCGCCCGCGACCGGGGCGAGCACCCACCAGACGGCATGGACGTCCTGGACCACATC
CTGGCCCCGATGTACATCCGCGTCCTGTTCGGCGCGGGGCCGCTCACCCCCGCCTGCGTCGACACGCTGGTCGACCGCCT
ACTGGCCCCCTCCGCGGTTGCTCGGGGGACCCGCACGGGAGGAGCGACAGGGCGGAAGACTGAGCTCGCGTAG

Upstream 100 bases:

>100_bases
AACCTCGCGATCACCCCTAAAGCAGTCACGGGCTGCATTAGGGGTAATGTATGGCATCGGACCAGGCAAACGCAAGTTTG
GGCTGCGTTAAGGTGGTGGC

Downstream 100 bases:

>100_bases
CTGGCCGATCAGCCTCGACGGCCGCAGCGTCGCGGTCGGCCAGAACCTACCGATGGGGCTGTGCCGCCGCCGGCCCCGGG
TCGGCGGCCGGCCGTCGTGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MLEQRPTRRPGGRSARIRAAVHQAATDLIAERGYGHFTVGDVATRATVADTSIYRRWGTLEALLADVAMTWLTTTSPIPD
TGGLEQDLRTYAANVARDLTGPDGLAVLRLVIALSSAGEAGVRARDAFLAERGRQLQGMLDRARDRGEHPPDGMDVLDHI
LAPMYIRVLFGAGPLTPACVDTLVDRLLAPSAVARGTRTGGATGRKTELA

Sequences:

>Translated_210_residues
MLEQRPTRRPGGRSARIRAAVHQAATDLIAERGYGHFTVGDVATRATVADTSIYRRWGTLEALLADVAMTWLTTTSPIPD
TGGLEQDLRTYAANVARDLTGPDGLAVLRLVIALSSAGEAGVRARDAFLAERGRQLQGMLDRARDRGEHPPDGMDVLDHI
LAPMYIRVLFGAGPLTPACVDTLVDRLLAPSAVARGTRTGGATGRKTELA
>Mature_210_residues
MLEQRPTRRPGGRSARIRAAVHQAATDLIAERGYGHFTVGDVATRATVADTSIYRRWGTLEALLADVAMTWLTTTSPIPD
TGGLEQDLRTYAANVARDLTGPDGLAVLRLVIALSSAGEAGVRARDAFLAERGRQLQGMLDRARDRGEHPPDGMDVLDHI
LAPMYIRVLFGAGPLTPACVDTLVDRLLAPSAVARGTRTGGATGRKTELA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22422; Mature: 22422

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQRPTRRPGGRSARIRAAVHQAATDLIAERGYGHFTVGDVATRATVADTSIYRRWGTL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
EALLADVAMTWLTTTSPIPDTGGLEQDLRTYAANVARDLTGPDGLAVLRLVIALSSAGEA
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
GVRARDAFLAERGRQLQGMLDRARDRGEHPPDGMDVLDHILAPMYIRVLFGAGPLTPACV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
DTLVDRLLAPSAVARGTRTGGATGRKTELA
HHHHHHHHCCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLEQRPTRRPGGRSARIRAAVHQAATDLIAERGYGHFTVGDVATRATVADTSIYRRWGTL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
EALLADVAMTWLTTTSPIPDTGGLEQDLRTYAANVARDLTGPDGLAVLRLVIALSSAGEA
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
GVRARDAFLAERGRQLQGMLDRARDRGEHPPDGMDVLDHILAPMYIRVLFGAGPLTPACV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
DTLVDRLLAPSAVARGTRTGGATGRKTELA
HHHHHHHHCCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]