| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318320
Identifier: 158318320
GI number: 158318320
Start: 8014314
End: 8014700
Strand: Reverse
Name: 158318320
Synonym: Franean1_6585
Alternate gene names: NA
Gene position: 8014700-8014314 (Counterclockwise)
Preceding gene: 158318321
Following gene: 158318319
Centisome position: 89.23
GC content: 69.77
Gene sequence:
>387_bases TTGTCCGTTATGGCTTCGCGTGCTCGTAAGACCAGTCGTTCCATCCGCCGCGGCCGTGCGCTGCTTGTCGCACCGCTCCT CGCCGCCACGATCGGCGGCGGAATCGCGATGTCACAGCCCGCCAGTGCCGCGGGTCGGCCGGACGCACACCGCTTCCTGA GCGCGGTTGTGCCCTGCGAGTCCGGCGGTAACCCCCGCGTGGTCAACTCGATCGGCGCGGGCGGCCTGTTCCAGTTCCTG CCAGGCACCTGGCACGGCGTCGGTGGGCAGGGCCTCCCGCAGAACGCAAGCGTCGCCGAGCAGTGGAAGCGCGCGCACAT CCTGTACGCGCAGCAGGGAACCAGCCCGTGGTACGCCTCGAAGAGCTGCTGGGGCCCCAAGCTCTGA
Upstream 100 bases:
>100_bases CGATCACAGACGTCCTCGGGGTGAAGTCGCGTAGCGCGACCGGGTAAATCCCAGCCCGAACCCGACAGCTAACTTCGCAG GCGTGGGGAGGGGCATCACT
Downstream 100 bases:
>100_bases CCCAGCCCCCAGGCTCTGGCGCGGCCCGTCGAATGGCTCTGACGCGGCCCGTCGAATGGAGCAGACAAGTGACGGACCAG CCTGGCTGAGCCCTGGCTGA
Product: transglycosylase domain-containing protein
Products: NA
Alternate protein names: Transglycosylase Domain Protein; Membrane-Bound Lytic Murein Transglycosylase E; Transglycosylase-Like Protein; Transglycosylase-Like Domain Protein; G5 Domain-Containing Protein; N-Acetylmuramoyl-L-Alanine Amidase
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MSVMASRARKTSRSIRRGRALLVAPLLAATIGGGIAMSQPASAAGRPDAHRFLSAVVPCESGGNPRVVNSIGAGGLFQFL PGTWHGVGGQGLPQNASVAEQWKRAHILYAQQGTSPWYASKSCWGPKL
Sequences:
>Translated_128_residues MSVMASRARKTSRSIRRGRALLVAPLLAATIGGGIAMSQPASAAGRPDAHRFLSAVVPCESGGNPRVVNSIGAGGLFQFL PGTWHGVGGQGLPQNASVAEQWKRAHILYAQQGTSPWYASKSCWGPKL >Mature_127_residues SVMASRARKTSRSIRRGRALLVAPLLAATIGGGIAMSQPASAAGRPDAHRFLSAVVPCESGGNPRVVNSIGAGGLFQFLP GTWHGVGGQGLPQNASVAEQWKRAHILYAQQGTSPWYASKSCWGPKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13380; Mature: 13248
Theoretical pI: Translated: 11.97; Mature: 11.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVMASRARKTSRSIRRGRALLVAPLLAATIGGGIAMSQPASAAGRPDAHRFLSAVVPCE CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC SGGNPRVVNSIGAGGLFQFLPGTWHGVGGQGLPQNASVAEQWKRAHILYAQQGTSPWYAS CCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCCCCC KSCWGPKL CCCCCCCC >Mature Secondary Structure SVMASRARKTSRSIRRGRALLVAPLLAATIGGGIAMSQPASAAGRPDAHRFLSAVVPCE CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC SGGNPRVVNSIGAGGLFQFLPGTWHGVGGQGLPQNASVAEQWKRAHILYAQQGTSPWYAS CCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCCCCC KSCWGPKL CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA