Click here to switch to the map view.

The map label for this gene is ythA [H]

Identifier: 158318315

GI number: 158318315

Start: 8005680

End: 8007245

Strand: Reverse

Name: ythA [H]

Synonym: Franean1_6580

Alternate gene names: 158318315

Gene position: 8007245-8005680 (Counterclockwise)

Preceding gene: 158318319

Following gene: 158318314

Centisome position: 89.15

GC content: 71.26

Gene sequence:

>1566_bases
ATGGTCCATGCCGCCGAAGTTCTCTCCCACGTCGCGGCTCTCGCCCAGGCCGCGGACCCGCCCCAGGCGAGCTCCGTGTC
CACCAACCTGGCCCGGGCGCAGACCGCGTTCTCGCTGGCGTTCCACATCTGCTTCGCGGTGTTCGGCGTCGGCATGCCAT
GGCTCCTGCTGTTCGTCGAGGGGCGCTGGGTCCGCACCCGCGACCCCGTCTGGCTCGCGCTGACCCGCAAGTGGTCCAGG
GCCTTCGCGGTCGTGTTCGCCGTCGGCGCCGTCTCCGGGACGGCGCTGTCCTTCGAGTTCGGCCTGCTGTGGCCGGCCTT
CATGGCCCGGTACGGCGGGGTGCTGGGACTGTCGTTCACGCTGGAGGGCTTCGCGTTCTTCGCCGAGGCGATCTTCATCG
GCATGTACCTGTACGGCTGGAAGCGCCTGTCGGCCCGGGCGCACTGGCTCACGCTGTGGCCGATCGCCATCGCCGGCACG
TTCTCGACTCTCTTCATCATCACGGCGAACGCCTGGATGAACACCCCCGGACACGTCACAGAGGTCGACGGCAAGGTCGT
ATCGGCAGAGCCGTTCGCCCCGTTCCTGGCTGCCACCGCGCCGCATCAGCTCATCCACATGCTGCTGGCCGCGCTGATGT
GCACCGGCGGCATCGTCGCCGGCGTGTACGCCGTCGGCATGCTGCGCGGCCGGCGCGACGCGTATCACCAGCGGGGACTG
CGCGTCGGTCTGGCCGTCCTGCTCGTCTGTGCCCCCCTGCAACTGATCGTCGGTGACTGGGCCGCCCGGGTGGTCGGCAA
CGAGCAGCCGATCAAGCTCGCCGCGATGGAGGGGCTCGGGCACACCCGCACGCACGCCCCGCTGACCATCGGCGGGATCT
ACGACGAGCAGACCGGCGAGGTCCGGCACGGCATCGAGGTCCCCGACCTGCTGTCGCTCATGCAGGGGTTCAGCGCCGAT
CACGAGATCACCGGCCTGACCGCCGTCCCGCCCGAGGAGCGGCCGAACGCCGTGCTGGTGCACTCGGCCTTCAACGTGAT
GGTCGGCCTCGGGATGGCCCTGATCGCGTTGTCGCTGGTCACCGGGGTCGTCGTCCTGCGCCGGCGGCGGCGCGGCGAGC
GCCCGCTGCTGCCCACCGGAAAACCGTGGCTCTGGGCGGCCGCGGCCTCGGGACCGGCGTCCATGCTGGCGATGCTCGCT
GGCTGGGAGGTCACCGAGGGCGGCCGCCAGCCCTGGATCGTCTACGGCCGGATGCGGGTGGATGAGGCCGTGACCAGCAG
CTCGGGCATGCCGGCGATCTTCACTGGCACGATCCTGCTCTACCTCGGCCTCGCGACGGCGCTCATCCTCATCCTGCGCC
GGATGGCGACGGGTGGCCCTGAGCTGGCCGCCACCGTGGGGGAGACCTCCACGACTCCGGACATCCCGGACGCGCGTCCC
GCTCCCGCCTCTCCCGACACTCCCGCGAGGGTCCGCGGTGACGGCGACGGTGGCGACGGGCCCGGGACGTCCGCGCCCAC
CACACCGCGAACCGATCCGTCCAGCAGCGAAGGGGACGCCCGATGA

Upstream 100 bases:

>100_bases
CGATCTCACAACGAAAAAATCTTCTACCGAACGTAGAATCTTCTACGTAATGTAGAAGAATGCGACGGGCGTGCTGCCGC
CCGCGGTGGAGGAGGTCCAG

Downstream 100 bases:

>100_bases
CCGCCGCCGACCTGCTCGCCGTCGTGATGGTGATCGGGCTGACCGCCTACGCCCTCACCGGGGGCGCCGACTTCGGCGGC
GGGGTCTGGGACCTGCTCGC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MVHAAEVLSHVAALAQAADPPQASSVSTNLARAQTAFSLAFHICFAVFGVGMPWLLLFVEGRWVRTRDPVWLALTRKWSR
AFAVVFAVGAVSGTALSFEFGLLWPAFMARYGGVLGLSFTLEGFAFFAEAIFIGMYLYGWKRLSARAHWLTLWPIAIAGT
FSTLFIITANAWMNTPGHVTEVDGKVVSAEPFAPFLAATAPHQLIHMLLAALMCTGGIVAGVYAVGMLRGRRDAYHQRGL
RVGLAVLLVCAPLQLIVGDWAARVVGNEQPIKLAAMEGLGHTRTHAPLTIGGIYDEQTGEVRHGIEVPDLLSLMQGFSAD
HEITGLTAVPPEERPNAVLVHSAFNVMVGLGMALIALSLVTGVVVLRRRRRGERPLLPTGKPWLWAAAASGPASMLAMLA
GWEVTEGGRQPWIVYGRMRVDEAVTSSSGMPAIFTGTILLYLGLATALILILRRMATGGPELAATVGETSTTPDIPDARP
APASPDTPARVRGDGDGGDGPGTSAPTTPRTDPSSSEGDAR

Sequences:

>Translated_521_residues
MVHAAEVLSHVAALAQAADPPQASSVSTNLARAQTAFSLAFHICFAVFGVGMPWLLLFVEGRWVRTRDPVWLALTRKWSR
AFAVVFAVGAVSGTALSFEFGLLWPAFMARYGGVLGLSFTLEGFAFFAEAIFIGMYLYGWKRLSARAHWLTLWPIAIAGT
FSTLFIITANAWMNTPGHVTEVDGKVVSAEPFAPFLAATAPHQLIHMLLAALMCTGGIVAGVYAVGMLRGRRDAYHQRGL
RVGLAVLLVCAPLQLIVGDWAARVVGNEQPIKLAAMEGLGHTRTHAPLTIGGIYDEQTGEVRHGIEVPDLLSLMQGFSAD
HEITGLTAVPPEERPNAVLVHSAFNVMVGLGMALIALSLVTGVVVLRRRRRGERPLLPTGKPWLWAAAASGPASMLAMLA
GWEVTEGGRQPWIVYGRMRVDEAVTSSSGMPAIFTGTILLYLGLATALILILRRMATGGPELAATVGETSTTPDIPDARP
APASPDTPARVRGDGDGGDGPGTSAPTTPRTDPSSSEGDAR
>Mature_521_residues
MVHAAEVLSHVAALAQAADPPQASSVSTNLARAQTAFSLAFHICFAVFGVGMPWLLLFVEGRWVRTRDPVWLALTRKWSR
AFAVVFAVGAVSGTALSFEFGLLWPAFMARYGGVLGLSFTLEGFAFFAEAIFIGMYLYGWKRLSARAHWLTLWPIAIAGT
FSTLFIITANAWMNTPGHVTEVDGKVVSAEPFAPFLAATAPHQLIHMLLAALMCTGGIVAGVYAVGMLRGRRDAYHQRGL
RVGLAVLLVCAPLQLIVGDWAARVVGNEQPIKLAAMEGLGHTRTHAPLTIGGIYDEQTGEVRHGIEVPDLLSLMQGFSAD
HEITGLTAVPPEERPNAVLVHSAFNVMVGLGMALIALSLVTGVVVLRRRRRGERPLLPTGKPWLWAAAASGPASMLAMLA
GWEVTEGGRQPWIVYGRMRVDEAVTSSSGMPAIFTGTILLYLGLATALILILRRMATGGPELAATVGETSTTPDIPDARP
APASPDTPARVRGDGDGGDGPGTSAPTTPRTDPSSSEGDAR

Specific function: Probable cytochrome [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=25, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI87081779, Length=313, Percent_Identity=27.7955271565495, Blast_Score=137, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 55341; Mature: 55341

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHAAEVLSHVAALAQAADPPQASSVSTNLARAQTAFSLAFHICFAVFGVGMPWLLLFVE
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
GRWVRTRDPVWLALTRKWSRAFAVVFAVGAVSGTALSFEFGLLWPAFMARYGGVLGLSFT
CCEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCEEEEHHH
LEGFAFFAEAIFIGMYLYGWKRLSARAHWLTLWPIAIAGTFSTLFIITANAWMNTPGHVT
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHEEEEEEECCCCCCCCCEE
EVDGKVVSAEPFAPFLAATAPHQLIHMLLAALMCTGGIVAGVYAVGMLRGRRDAYHQRGL
ECCCEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHH
RVGLAVLLVCAPLQLIVGDWAARVVGNEQPIKLAAMEGLGHTRTHAPLTIGGIYDEQTGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCC
VRHGIEVPDLLSLMQGFSADHEITGLTAVPPEERPNAVLVHSAFNVMVGLGMALIALSLV
HHCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
TGVVVLRRRRRGERPLLPTGKPWLWAAAASGPASMLAMLAGWEVTEGGRQPWIVYGRMRV
HHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCEECCCCCCCEEEEEEEEH
DEAVTSSSGMPAIFTGTILLYLGLATALILILRRMATGGPELAATVGETSTTPDIPDARP
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCC
APASPDTPARVRGDGDGGDGPGTSAPTTPRTDPSSSEGDAR
CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVHAAEVLSHVAALAQAADPPQASSVSTNLARAQTAFSLAFHICFAVFGVGMPWLLLFVE
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
GRWVRTRDPVWLALTRKWSRAFAVVFAVGAVSGTALSFEFGLLWPAFMARYGGVLGLSFT
CCEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCEEEEHHH
LEGFAFFAEAIFIGMYLYGWKRLSARAHWLTLWPIAIAGTFSTLFIITANAWMNTPGHVT
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHEEEEEEECCCCCCCCCEE
EVDGKVVSAEPFAPFLAATAPHQLIHMLLAALMCTGGIVAGVYAVGMLRGRRDAYHQRGL
ECCCEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHH
RVGLAVLLVCAPLQLIVGDWAARVVGNEQPIKLAAMEGLGHTRTHAPLTIGGIYDEQTGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCC
VRHGIEVPDLLSLMQGFSADHEITGLTAVPPEERPNAVLVHSAFNVMVGLGMALIALSLV
HHCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
TGVVVLRRRRRGERPLLPTGKPWLWAAAASGPASMLAMLAGWEVTEGGRQPWIVYGRMRV
HHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCEECCCCCCCEEEEEEEEH
DEAVTSSSGMPAIFTGTILLYLGLATALILILRRMATGGPELAATVGETSTTPDIPDARP
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCC
APASPDTPARVRGDGDGGDGPGTSAPTTPRTDPSSSEGDAR
CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]