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The map label for this gene is cydB [C]

Identifier: 158318314

GI number: 158318314

Start: 8004691

End: 8005683

Strand: Reverse

Name: cydB [C]

Synonym: Franean1_6579

Alternate gene names: 158318314

Gene position: 8005683-8004691 (Counterclockwise)

Preceding gene: 158318315

Following gene: 158318313

Centisome position: 89.13

GC content: 74.02

Gene sequence:

>993_bases
ATGACCGCCGCCGACCTGCTCGCCGTCGTGATGGTGATCGGGCTGACCGCCTACGCCCTCACCGGGGGCGCCGACTTCGG
CGGCGGGGTCTGGGACCTGCTCGCCCGCGGCCGGGACGCGGCCGACCAGCGCCGGCTCGTCTCCGCCGCGCTCGGCCCGG
TCTGGGAGGCCAACCACGTCTGGCTGATCTTCGTGATCGTCATGATGTTCAGCGGCTTCCCGGCCGCGTTCGGCATCGTC
GGGTCGACGCTGGAGATACCGCTCATCTGCGCGCTGGCCGGGATCGTCCTGCGCGGGGCCGCGTACGTGTACCGCGCCTA
CGGCGCCGGCGCGGCCGGGCCGGACCACTGGTGGGGCCACGTGTTCGCGATCTCGTCCGCGATCACCCCGGTCGCGCTCG
GGGTGTGCGGCGCCGCGCTGGCCACCGGTGATGTCGCCGAGGGCGACGCGCTCGCCCCGGTTACCAGCGCCTTCGGGATC
GTCTGCGGCGTCTTCACTCTCGCCGTGACGGCCTTCCTGGCCGCGGTGTACCTGTGCCGGGACGCGGCGTCGAGCCCGGA
GACCGAGCACCTGGTGCCCGGGTTCCGCCGCCGCGCGCTCGGCGGGGCCGTCGTCTCGGGGCTGCTCGCCGCGGCGCTGC
TGCCGCTGCTGTGGTCGGAGGCACCCGTCGTGGCGGAGCGGTTCGCCGAGCGGTCCGTGCCCTTTGCGATGATCTCGGCC
CTCGGCGGGATCGCGTCGCTGGTCGCGCTGTGGCAGCACCGCTTCACCGCGGCCCGCATCACGGCTGGGGCGGCGGTGGC
CGGCGTGCTCTGGGGGTGGGCGGCCGCCCAGTACCCGGATCTGGTCGTCGGCCGCGCGACGGTCGACTCCGCCGCCGCAC
CCGAGGCCAACATCGTGGCGATGCTGATCGCGGTCGCCTGCGGGCTGGTGGTCCTCATCCCGTCGCTGTGGATGCTGTTC
CGCCTGTTCGCGAACCCCGAAGTCAAGTCCTGA

Upstream 100 bases:

>100_bases
CCGCGAGGGTCCGCGGTGACGGCGACGGTGGCGACGGGCCCGGGACGTCCGCGCCCACCACACCGCGAACCGATCCGTCC
AGCAGCGAAGGGGACGCCCG

Downstream 100 bases:

>100_bases
CCGGCGCGGCCGGCCGGCGCGCGGAGGTGCGCGCCGGCCGGCCGGCGCCAGGCGTCCCGCCGCCCGCGACTACCGTCGAC
GGGTGACGAGGGCCAGCATC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome D Ubiquinol Oxidase Subunit II; Cytochrome Bd-I Oxidase Subunit II; Terminal Oxidase Subunit II; Cytochrome Bd-Type Quinol Oxidase Subunit 2- Like Protein; Cytochrome Bd Quinol Oxidase Subunit 2 Apoprotein

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MTAADLLAVVMVIGLTAYALTGGADFGGGVWDLLARGRDAADQRRLVSAALGPVWEANHVWLIFVIVMMFSGFPAAFGIV
GSTLEIPLICALAGIVLRGAAYVYRAYGAGAAGPDHWWGHVFAISSAITPVALGVCGAALATGDVAEGDALAPVTSAFGI
VCGVFTLAVTAFLAAVYLCRDAASSPETEHLVPGFRRRALGGAVVSGLLAAALLPLLWSEAPVVAERFAERSVPFAMISA
LGGIASLVALWQHRFTAARITAGAAVAGVLWGWAAAQYPDLVVGRATVDSAAAPEANIVAMLIAVACGLVVLIPSLWMLF
RLFANPEVKS

Sequences:

>Translated_330_residues
MTAADLLAVVMVIGLTAYALTGGADFGGGVWDLLARGRDAADQRRLVSAALGPVWEANHVWLIFVIVMMFSGFPAAFGIV
GSTLEIPLICALAGIVLRGAAYVYRAYGAGAAGPDHWWGHVFAISSAITPVALGVCGAALATGDVAEGDALAPVTSAFGI
VCGVFTLAVTAFLAAVYLCRDAASSPETEHLVPGFRRRALGGAVVSGLLAAALLPLLWSEAPVVAERFAERSVPFAMISA
LGGIASLVALWQHRFTAARITAGAAVAGVLWGWAAAQYPDLVVGRATVDSAAAPEANIVAMLIAVACGLVVLIPSLWMLF
RLFANPEVKS
>Mature_329_residues
TAADLLAVVMVIGLTAYALTGGADFGGGVWDLLARGRDAADQRRLVSAALGPVWEANHVWLIFVIVMMFSGFPAAFGIVG
STLEIPLICALAGIVLRGAAYVYRAYGAGAAGPDHWWGHVFAISSAITPVALGVCGAALATGDVAEGDALAPVTSAFGIV
CGVFTLAVTAFLAAVYLCRDAASSPETEHLVPGFRRRALGGAVVSGLLAAALLPLLWSEAPVVAERFAERSVPFAMISAL
GGIASLVALWQHRFTAARITAGAAVAGVLWGWAAAQYPDLVVGRATVDSAAAPEANIVAMLIAVACGLVVLIPSLWMLFR
LFANPEVKS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.10.3.-

Molecular weight: Translated: 33913; Mature: 33782

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAADLLAVVMVIGLTAYALTGGADFGGGVWDLLARGRDAADQRRLVSAALGPVWEANHV
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCH
WLIFVIVMMFSGFPAAFGIVGSTLEIPLICALAGIVLRGAAYVYRAYGAGAAGPDHWWGH
HHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
VFAISSAITPVALGVCGAALATGDVAEGDALAPVTSAFGIVCGVFTLAVTAFLAAVYLCR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAASSPETEHLVPGFRRRALGGAVVSGLLAAALLPLLWSEAPVVAERFAERSVPFAMISA
HCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
LGGIASLVALWQHRFTAARITAGAAVAGVLWGWAAAQYPDLVVGRATVDSAAAPEANIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCHHHHH
MLIAVACGLVVLIPSLWMLFRLFANPEVKS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAADLLAVVMVIGLTAYALTGGADFGGGVWDLLARGRDAADQRRLVSAALGPVWEANHV
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCH
WLIFVIVMMFSGFPAAFGIVGSTLEIPLICALAGIVLRGAAYVYRAYGAGAAGPDHWWGH
HHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
VFAISSAITPVALGVCGAALATGDVAEGDALAPVTSAFGIVCGVFTLAVTAFLAAVYLCR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAASSPETEHLVPGFRRRALGGAVVSGLLAAALLPLLWSEAPVVAERFAERSVPFAMISA
HCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
LGGIASLVALWQHRFTAARITAGAAVAGVLWGWAAAQYPDLVVGRATVDSAAAPEANIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCHHHHH
MLIAVACGLVVLIPSLWMLFRLFANPEVKS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA