| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318180
Identifier: 158318180
GI number: 158318180
Start: 7836951
End: 7838834
Strand: Direct
Name: 158318180
Synonym: Franean1_6445
Alternate gene names: NA
Gene position: 7836951-7838834 (Clockwise)
Preceding gene: 158318178
Following gene: 158318181
Centisome position: 87.25
GC content: 76.17
Gene sequence:
>1884_bases GTGCGGACAACCGGCACCGCGGCGGATCCCGCTGACCCCGCCGAGCCGAGCGACCCCCTCCCCGCGGATCCCCTCCCCCC TGATCCCGTCCCCGCTGATCCCGTCCCCGCCGGTGCGCGGCGGGACGGGCCGCGGCCGAGTCACCGGCACCGACGTCAGC GGCGCCGCCGGCGCCCGCTGGGCCGCGCGGGCCTGGTCCCGGCGGCGGTCCTCGCGGGGTACCTCGCGCTCGCTGTCGCC GTCTTCCGTGCCGCGTGGGCCGATCCCGGCGGCGTGGTTTACGGCTACAGCGACTCGGTGCTGTTCGCGTGGTACCTGGG CTGGGTCCCGCACGCCCTGTCCGCAGGCATCGACCCGTTCGTCACCTCGTACCTGAACGCCCCGACCGGCACGAACATCC TGTGGAGCACGCCCGTCCCGCTGCTCGGGCTGGTGACCGCGCCGGTGACCGCGCTGTTCGGCCCCGTCGTCTCGCTCACC CTGCTGCTGACACTGGCGCCGGCGCTCTCCGCGTTCGCCCTGTTCTGGGTGCTGCGGCGCTGGGTGCCGGCGCCGCCGGC CGCCGTCGCCGGCCTGCTCTACGGCTTCGGCCCGTACATGGTCGGCGAGTCGTACGGGCATCTGCATCTCACCTTCGCGG TCTTCCCGCCGCTGCTGCTGCTCCTGCTCGACGACCTGATCGTGCGCCGGCGCCCACCGGGGCGCACCGGCGTGCTGCTC GGCCTGGCGGTCGCTGCCCAGGCCATGATCAGCGAGGAGGTGCTGGCCACCGCCGCGCTGCTCGGCGCGCTCGGGCTCGC CATCGCCGGGCTGGCCCACCGCGCCGCCGTCCGCGCGCGGGCGGGTGCGCTGCTGCGGGGCCTGGCGGCCTGCGGCACGA CGGCCGGGACGCTGCTCGCCTGGCCGCTGACCGCGCAGTTCCTCGGCGACCAGCGGGTCCACGGCAACATCCAGCCGCAC AACGTCGCGGTGTCCGATCTGCTGACCTTCGTCACGCCGACCCCAGCCCAGCGGATCGCACCCGACGTGGCGCTGCGGCA CAGCCTGCGTTTCACCGGCAACGCGGTCGAGGTGACCGGCTACCTCGGGCTTCCCCTGCTGCTCGGGGTGGCCGCGATCG CCGTCCGGTTCCGCCGCGAGCCGCTGGTGGCGGTGTTCGCCCCGCTCGGCGCGGTGACGGCGCTGCTCTCCCTGGGCGGC CACCTGCACGTGGACGGACGGGTCACCGGCATCCGCCTGCCCTGGCTGCCGCTGGAGAACCTCCCGGTGATCAGCAGCGC GCTCCCGTCCCGGCTCGCGCTGTATCTGGCGATGTCCGTGGCGATCGTCCTCGCGGTGGGCCTGACCCGCGTCGCCGCGT CCGCCCGGTTCCCGCGGCCGGTCACCCGGGCCGGGCTCGTGCTGCTCACCGCGGTGATGCTGGCGCCGCTCGTGCCGCGC AGCCACGTGGCGACACCGGCCGCCACGCCCGCCTTCTTCACCGGCGACGCCGTCCGCGCGGTTCCCGAGGGATCGACGGC GCTGGTGCTGCCCTACCCCTATCCGGCCCGCACCGAGGCGATGCTCTGGCAGGCCGAGGCGGGCTACCGGTTCCGGCTCC CGGGCTGCTACTGCACCGTCCCGGGCCCGGACGGGCGCGCCGTCTTCAACGCGTGGACCGACCCGCTCAACGGCGCGCTG GTCGCGGTCGAGCAGGGCCGGTCGGACGCGGCGGCCGCGCTGGCCGATCCCGCCGTGCAGGCCGCCTTCGACCGGCTCGC GCCCGCCGCGGTGATCCTCGGCCCGAGCGCGAACCGGGACGAGCTCGCCCGGCTGGTGACCGGCCTGGCCGGCGCCGGGC CGGCGGACGTCGACGGGGTCCAGCTGTGGCTGACAGCGCCCTGA
Upstream 100 bases:
>100_bases CACGATGCGCGCATAACCGGGTCTGGTCGCGGTAGATCGCTCCCGGGCCGGGGGCGCGCCCGGCCCCGGGTGGCGCGACG GCGCGCAGCGAGGGGGAACC
Downstream 100 bases:
>100_bases TCACCACCTTGTGATCACCATTGGCGCCCCGGTATGTCTGGGATGTCCCACCAGTGCGACGCGCTGTGACCAGGTGTCCG GTGTTCGACACCCAAAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 627; Mature: 627
Protein sequence:
>627_residues MRTTGTAADPADPAEPSDPLPADPLPPDPVPADPVPAGARRDGPRPSHRHRRQRRRRRPLGRAGLVPAAVLAGYLALAVA VFRAAWADPGGVVYGYSDSVLFAWYLGWVPHALSAGIDPFVTSYLNAPTGTNILWSTPVPLLGLVTAPVTALFGPVVSLT LLLTLAPALSAFALFWVLRRWVPAPPAAVAGLLYGFGPYMVGESYGHLHLTFAVFPPLLLLLLDDLIVRRRPPGRTGVLL GLAVAAQAMISEEVLATAALLGALGLAIAGLAHRAAVRARAGALLRGLAACGTTAGTLLAWPLTAQFLGDQRVHGNIQPH NVAVSDLLTFVTPTPAQRIAPDVALRHSLRFTGNAVEVTGYLGLPLLLGVAAIAVRFRREPLVAVFAPLGAVTALLSLGG HLHVDGRVTGIRLPWLPLENLPVISSALPSRLALYLAMSVAIVLAVGLTRVAASARFPRPVTRAGLVLLTAVMLAPLVPR SHVATPAATPAFFTGDAVRAVPEGSTALVLPYPYPARTEAMLWQAEAGYRFRLPGCYCTVPGPDGRAVFNAWTDPLNGAL VAVEQGRSDAAAALADPAVQAAFDRLAPAAVILGPSANRDELARLVTGLAGAGPADVDGVQLWLTAP
Sequences:
>Translated_627_residues MRTTGTAADPADPAEPSDPLPADPLPPDPVPADPVPAGARRDGPRPSHRHRRQRRRRRPLGRAGLVPAAVLAGYLALAVA VFRAAWADPGGVVYGYSDSVLFAWYLGWVPHALSAGIDPFVTSYLNAPTGTNILWSTPVPLLGLVTAPVTALFGPVVSLT LLLTLAPALSAFALFWVLRRWVPAPPAAVAGLLYGFGPYMVGESYGHLHLTFAVFPPLLLLLLDDLIVRRRPPGRTGVLL GLAVAAQAMISEEVLATAALLGALGLAIAGLAHRAAVRARAGALLRGLAACGTTAGTLLAWPLTAQFLGDQRVHGNIQPH NVAVSDLLTFVTPTPAQRIAPDVALRHSLRFTGNAVEVTGYLGLPLLLGVAAIAVRFRREPLVAVFAPLGAVTALLSLGG HLHVDGRVTGIRLPWLPLENLPVISSALPSRLALYLAMSVAIVLAVGLTRVAASARFPRPVTRAGLVLLTAVMLAPLVPR SHVATPAATPAFFTGDAVRAVPEGSTALVLPYPYPARTEAMLWQAEAGYRFRLPGCYCTVPGPDGRAVFNAWTDPLNGAL VAVEQGRSDAAAALADPAVQAAFDRLAPAAVILGPSANRDELARLVTGLAGAGPADVDGVQLWLTAP >Mature_627_residues MRTTGTAADPADPAEPSDPLPADPLPPDPVPADPVPAGARRDGPRPSHRHRRQRRRRRPLGRAGLVPAAVLAGYLALAVA VFRAAWADPGGVVYGYSDSVLFAWYLGWVPHALSAGIDPFVTSYLNAPTGTNILWSTPVPLLGLVTAPVTALFGPVVSLT LLLTLAPALSAFALFWVLRRWVPAPPAAVAGLLYGFGPYMVGESYGHLHLTFAVFPPLLLLLLDDLIVRRRPPGRTGVLL GLAVAAQAMISEEVLATAALLGALGLAIAGLAHRAAVRARAGALLRGLAACGTTAGTLLAWPLTAQFLGDQRVHGNIQPH NVAVSDLLTFVTPTPAQRIAPDVALRHSLRFTGNAVEVTGYLGLPLLLGVAAIAVRFRREPLVAVFAPLGAVTALLSLGG HLHVDGRVTGIRLPWLPLENLPVISSALPSRLALYLAMSVAIVLAVGLTRVAASARFPRPVTRAGLVLLTAVMLAPLVPR SHVATPAATPAFFTGDAVRAVPEGSTALVLPYPYPARTEAMLWQAEAGYRFRLPGCYCTVPGPDGRAVFNAWTDPLNGAL VAVEQGRSDAAAALADPAVQAAFDRLAPAAVILGPSANRDELARLVTGLAGAGPADVDGVQLWLTAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65368; Mature: 65368
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTTGTAADPADPAEPSDPLPADPLPPDPVPADPVPAGARRDGPRPSHRHRRQRRRRRPL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC GRAGLVPAAVLAGYLALAVAVFRAAWADPGGVVYGYSDSVLFAWYLGWVPHALSAGIDPF CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCHH VTSYLNAPTGTNILWSTPVPLLGLVTAPVTALFGPVVSLTLLLTLAPALSAFALFWVLRR HHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVPAPPAAVAGLLYGFGPYMVGESYGHLHLTFAVFPPLLLLLLDDLIVRRRPPGRTGVLL HCCCCHHHHHHHHHHCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH GLAVAAQAMISEEVLATAALLGALGLAIAGLAHRAAVRARAGALLRGLAACGTTAGTLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEE WPLTAQFLGDQRVHGNIQPHNVAVSDLLTFVTPTPAQRIAPDVALRHSLRFTGNAVEVTG HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCHHHHHHHHHEECCCEEEEEE YLGLPLLLGVAAIAVRFRREPLVAVFAPLGAVTALLSLGGHLHVDGRVTGIRLPWLPLEN HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCCC LPVISSALPSRLALYLAMSVAIVLAVGLTRVAASARFPRPVTRAGLVLLTAVMLAPLVPR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC SHVATPAATPAFFTGDAVRAVPEGSTALVLPYPYPARTEAMLWQAEAGYRFRLPGCYCTV CCCCCCCCCCCEECCCHHEECCCCCEEEEECCCCCCCCHHEEEEECCCCEEECCCEEEEC PGPDGRAVFNAWTDPLNGALVAVEQGRSDAAAALADPAVQAAFDRLAPAAVILGPSANRD CCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHH ELARLVTGLAGAGPADVDGVQLWLTAP HHHHHHHHHCCCCCCCCCCEEEEEECC >Mature Secondary Structure MRTTGTAADPADPAEPSDPLPADPLPPDPVPADPVPAGARRDGPRPSHRHRRQRRRRRPL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC GRAGLVPAAVLAGYLALAVAVFRAAWADPGGVVYGYSDSVLFAWYLGWVPHALSAGIDPF CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCHH VTSYLNAPTGTNILWSTPVPLLGLVTAPVTALFGPVVSLTLLLTLAPALSAFALFWVLRR HHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVPAPPAAVAGLLYGFGPYMVGESYGHLHLTFAVFPPLLLLLLDDLIVRRRPPGRTGVLL HCCCCHHHHHHHHHHCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH GLAVAAQAMISEEVLATAALLGALGLAIAGLAHRAAVRARAGALLRGLAACGTTAGTLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEE WPLTAQFLGDQRVHGNIQPHNVAVSDLLTFVTPTPAQRIAPDVALRHSLRFTGNAVEVTG HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCHHHHHHHHHEECCCEEEEEE YLGLPLLLGVAAIAVRFRREPLVAVFAPLGAVTALLSLGGHLHVDGRVTGIRLPWLPLEN HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCCC LPVISSALPSRLALYLAMSVAIVLAVGLTRVAASARFPRPVTRAGLVLLTAVMLAPLVPR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC SHVATPAATPAFFTGDAVRAVPEGSTALVLPYPYPARTEAMLWQAEAGYRFRLPGCYCTV CCCCCCCCCCCEECCCHHEECCCCCEEEEECCCCCCCCHHEEEEECCCCEEECCCEEEEC PGPDGRAVFNAWTDPLNGALVAVEQGRSDAAAALADPAVQAAFDRLAPAAVILGPSANRD CCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHH ELARLVTGLAGAGPADVDGVQLWLTAP HHHHHHHHHCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA