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The map label for this gene is ubiF [C]

Identifier: 158317711

GI number: 158317711

Start: 7272671

End: 7273900

Strand: Direct

Name: ubiF [C]

Synonym: Franean1_5969

Alternate gene names: 158317711

Gene position: 7272671-7273900 (Clockwise)

Preceding gene: 158317707

Following gene: 158317714

Centisome position: 80.97

GC content: 77.07

Gene sequence:

>1230_bases
GTGCCCATCCACGCACCCAGCCCCGTCCACTCCGCCGTTCCCGGCACCGGGAACGGGCCGCCGGTAGACCTGCTCGTGGT
GGGCGGCGGCCCGGCGGGCAGCTCGGCTGCGCTGCGGGCGCTGCAGCTGCGGCCCGACGCCCGGGTCGTGATCGTCGACG
CCGCGGACTTCCCCCGCGACAAGACCTGCGGGGACGGCATCGCACCGCACGGCGTGGACGTCCTGCGCGCGCTGGGCATC
ACCGACGCGACCAGCGGGTACCGCCCGGTGGACCGGATGCGCCTGCGCACGCCTGGCGGTGCCGAGGTCGCCACGCCGTC
CGAGCGGGCCACGCACGTGATCCCGCGGGAGGTCTTCGACGCCCGCCTCGTCGCCGCCGCGCGCGCCCGCGGCGCCGAGT
TCCTCCGGCGGCGGGTGCGCTCGCTGGAGGTCACCGCCGGCGGCGGGGGCGAGCCGGTGGTCACCGTGGACGGCGGCGTG
CTGCGCGCACGGGTCGTCGTCGGCGCGGACGGCGCGAACTCGACCGTGCGCCGGGCGCTGGGCATCGCGCCGAACCCGCC
CGAGGGTCTGGCGATCGCCGTCCGCGCCTACGCGGACGCACCCAAGGACGACCGCCCGCCCGAGCAGCTCATCGAGATGA
CGGACGAGGGCTGGCCGGCCTACGCCTGGTCGTTCCCGATCGGGGACGGCCGGGCCAACATCGGGTACGGCATGCTCCGC
TCGCGGCTGCGCGCGGCGGGCACGACACCGAAGGCCGTCCTGCACGGGACGCTGGCCCGGCTGCTGCCGGACACCCCCGC
CTACGAAGGCACCCTGCGCGCGCACCACCTGCCGCTGTCCACGCACCGCCCACGGCTGCCGGACGGCCCCGTGCTCCTCG
CCGGGGACGCCGCGTCGCTGATCAATCCGTTGACCGGCGAGGGCATCTACTACGCGCTGCTGTCGGGATCGCTGGCCGGC
CAGGCGGCGATCACCGACCCGGGGCCGGCCGCCGGGCGGGCCTACCGACGCGCCCTGGACGGCGAGCTGGGCAGGCACCT
GCGGCACACGTCGCTGCTCGCCGGGCTCGCCGGCCGCCACCGCCCGCTGATGGACGCCGCGGTCCGCTCCGCCAGCCGCC
GCACCGAGCTGTACGACAGCCTCGTCGAGATCGGGCTGGGTAAGGGGACGATCCCGGCCGCGTCACTGGCCCGGCTCGGG
CTGCGGCGTGTGTTCACCGCGGCGCGCTGA

Upstream 100 bases:

>100_bases
GCACGGGCCACGTGTCCAGCTCCCTGAGCGCATCCATGTCCGGCACTCTACGAACCGCCGGCCGACCGGTGTCGGGACGC
CGGCTGCCACACTGGCTGGC

Downstream 100 bases:

>100_bases
GCCCACCCGAACCCGCCCACGCTCACCCGCCGGCCCAGCGGGCCCACAGGCTCGGTGGTCCCGGAGGTTCCCGGGGTCCG
AGCGCGTCCTGTGGGTGCGT

Product: geranylgeranyl reductase

Products: 2-Octaprenyl-3-Methyl-5-Hydroxy-6-Methoxy-1,4- Benzoquinol [C]

Alternate protein names: DGGGPL reductase 2; 2,3-di-O-geranylgeranylglyceryl phosphate reductase 2; Geranylgeranyl reductase 2; GGR 2 [H]

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MPIHAPSPVHSAVPGTGNGPPVDLLVVGGGPAGSSAALRALQLRPDARVVIVDAADFPRDKTCGDGIAPHGVDVLRALGI
TDATSGYRPVDRMRLRTPGGAEVATPSERATHVIPREVFDARLVAAARARGAEFLRRRVRSLEVTAGGGGEPVVTVDGGV
LRARVVVGADGANSTVRRALGIAPNPPEGLAIAVRAYADAPKDDRPPEQLIEMTDEGWPAYAWSFPIGDGRANIGYGMLR
SRLRAAGTTPKAVLHGTLARLLPDTPAYEGTLRAHHLPLSTHRPRLPDGPVLLAGDAASLINPLTGEGIYYALLSGSLAG
QAAITDPGPAAGRAYRRALDGELGRHLRHTSLLAGLAGRHRPLMDAAVRSASRRTELYDSLVEIGLGKGTIPAASLARLG
LRRVFTAAR

Sequences:

>Translated_409_residues
MPIHAPSPVHSAVPGTGNGPPVDLLVVGGGPAGSSAALRALQLRPDARVVIVDAADFPRDKTCGDGIAPHGVDVLRALGI
TDATSGYRPVDRMRLRTPGGAEVATPSERATHVIPREVFDARLVAAARARGAEFLRRRVRSLEVTAGGGGEPVVTVDGGV
LRARVVVGADGANSTVRRALGIAPNPPEGLAIAVRAYADAPKDDRPPEQLIEMTDEGWPAYAWSFPIGDGRANIGYGMLR
SRLRAAGTTPKAVLHGTLARLLPDTPAYEGTLRAHHLPLSTHRPRLPDGPVLLAGDAASLINPLTGEGIYYALLSGSLAG
QAAITDPGPAAGRAYRRALDGELGRHLRHTSLLAGLAGRHRPLMDAAVRSASRRTELYDSLVEIGLGKGTIPAASLARLG
LRRVFTAAR
>Mature_408_residues
PIHAPSPVHSAVPGTGNGPPVDLLVVGGGPAGSSAALRALQLRPDARVVIVDAADFPRDKTCGDGIAPHGVDVLRALGIT
DATSGYRPVDRMRLRTPGGAEVATPSERATHVIPREVFDARLVAAARARGAEFLRRRVRSLEVTAGGGGEPVVTVDGGVL
RARVVVGADGANSTVRRALGIAPNPPEGLAIAVRAYADAPKDDRPPEQLIEMTDEGWPAYAWSFPIGDGRANIGYGMLRS
RLRAAGTTPKAVLHGTLARLLPDTPAYEGTLRAHHLPLSTHRPRLPDGPVLLAGDAASLINPLTGEGIYYALLSGSLAGQ
AAITDPGPAAGRAYRRALDGELGRHLRHTSLLAGLAGRHRPLMDAAVRSASRRTELYDSLVEIGLGKGTIPAASLARLGL
RRVFTAAR

Specific function: Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. DGGGPL reductase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.14.13.- [C]

Molecular weight: Translated: 42658; Mature: 42527

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIHAPSPVHSAVPGTGNGPPVDLLVVGGGPAGSSAALRALQLRPDARVVIVDAADFPRD
CCCCCCCCCHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHEEECCCCEEEEEECCCCCCC
KTCGDGIAPHGVDVLRALGITDATSGYRPVDRMRLRTPGGAEVATPSERATHVIPREVFD
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCCCCCHHHHHHCHHHHHH
ARLVAAARARGAEFLRRRVRSLEVTAGGGGEPVVTVDGGVLRARVVVGADGANSTVRRAL
HHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCEEEEEEEEECCCCCHHHHHHH
GIAPNPPEGLAIAVRAYADAPKDDRPPEQLIEMTDEGWPAYAWSFPIGDGRANIGYGMLR
CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHH
SRLRAAGTTPKAVLHGTLARLLPDTPAYEGTLRAHHLPLSTHRPRLPDGPVLLAGDAASL
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCHHHH
INPLTGEGIYYALLSGSLAGQAAITDPGPAAGRAYRRALDGELGRHLRHTSLLAGLAGRH
HCCCCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPLMDAAVRSASRRTELYDSLVEIGLGKGTIPAASLARLGLRRVFTAAR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PIHAPSPVHSAVPGTGNGPPVDLLVVGGGPAGSSAALRALQLRPDARVVIVDAADFPRD
CCCCCCCCHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHEEECCCCEEEEEECCCCCCC
KTCGDGIAPHGVDVLRALGITDATSGYRPVDRMRLRTPGGAEVATPSERATHVIPREVFD
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCCCCCHHHHHHCHHHHHH
ARLVAAARARGAEFLRRRVRSLEVTAGGGGEPVVTVDGGVLRARVVVGADGANSTVRRAL
HHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCEEEEEEEEECCCCCHHHHHHH
GIAPNPPEGLAIAVRAYADAPKDDRPPEQLIEMTDEGWPAYAWSFPIGDGRANIGYGMLR
CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHH
SRLRAAGTTPKAVLHGTLARLLPDTPAYEGTLRAHHLPLSTHRPRLPDGPVLLAGDAASL
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCHHHH
INPLTGEGIYYALLSGSLAGQAAITDPGPAAGRAYRRALDGELGRHLRHTSLLAGLAGRH
HCCCCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPLMDAAVRSASRRTELYDSLVEIGLGKGTIPAASLARLGLRRVFTAAR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: @OCTA02.txt*2-Octaprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol! [C]

Specific reaction: @OCTA02.txt*2-Octaprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol! = 2-Octaprenyl-3-Methyl-5-Hydroxy-6-Methoxy-1,4- Benzoquinol [C]

General reaction: Hydroxylation [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11930014 [H]