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The map label for this gene is bcd [H]

Identifier: 158317353

GI number: 158317353

Start: 6796408

End: 6797796

Strand: Reverse

Name: bcd [H]

Synonym: Franean1_5603

Alternate gene names: 158317353

Gene position: 6797796-6796408 (Counterclockwise)

Preceding gene: 158317355

Following gene: 158317352

Centisome position: 75.68

GC content: 72.5

Gene sequence:

>1389_bases
ATGATGCCCAGGTGGCCCGCCGGCGGGTCCGGTCCGGACAGTGGCGGTCGTCGCGGCCGGGGATCCCGTGTCCCTGTTCG
CGCCCGGCGCCGCGCGTCGAGGCCCGGATGGGGCATGCTGGTCGGGCGAATCGATCTGCTGCCGTCGCACACCGTCGGGC
GGGGGTGCCCGACCAGGGGCCGCCCGATCCACGACCTGGCCCGGAGTGGTGATCAGATGGACCTGACCTTCAGCGCCGCG
GAGGAGGCGTTCCGCGCGGACCTGCGGAGCTGGCTCGCCGGGAGCGTCCCCGCGGCGTGGCGGGAGCCGGGCTTCTGGGC
GGGTGTCCCCGACGACGAGGACTTCGAGCTACGCCGGGAGTGGGAGCGCCGCAAGTTCGAGGCGGGCTTCGCCGGCATCG
ACTGGCCTACCGAGTACGGCGGGCGCGGCGGCACCCCCGGCATGAAGGCGATCTACGACCAGGAGCTGGCGCTCGCCCGC
GCGCCGGGAACCGTCAACCCGCTCGGGCTCGCCTTCCTCGCCCCGACGATCATGGCGATCGGCACGGACGAGCAGAAGCG
TGAGATCATCCGTCCGCTGCTGCGCTGCGACGTGATCTGGTGCCAGGGCTTCTCCGAGCCGGACGCGGGCTCCGACCTGG
CCGCACTGCGGACGTCCGGCGTGGCCGACGGCGACGACATCGTCGTCAACGGCCAGAAGGTCTGGACGACCAACGCCGGC
CACGGTGACCGGATCTTCACCATGGTCCGCACCGAGCCGGGCAGCCAGCGCCACCGCGGCCTGTCGATGCTGCTGCTCGA
CATGCACCAGGACGGCGTCGAGGTGCGGCCGCTGCGGCAGATGAGTGGGGCGACCGAGTTCGGCGAGGTGTTCTTCACCG
ACGCCCGGGTCCCCGCCCGCGAGTGCCTCGGCGGCCTGGGCAACGGCTGGGCCACCGCGATGCTGCTGCTCTCCTTCGAA
CGCGGCGCGTCGGGCATCTCGCAGTACACCGCCTTCCGGCAGTCCTACGACGAGATCGTCCGGGCGGCCCGCGCGCTGGG
GCGGGACACCGACCCGGTGCTGCGCCAGGAGCTCGGCCGCCGGATGGTCGAGCTCGAGTGCCTGCGCTACCACGCCATGC
ACGTGCTCACCCAGGTGGAGCGGGGCGCCGACCTGGGCGCCGAGTCGTCGATGACCAAGCTGCAGTGGTCCGAGACCTAC
CAGGACCTGTTCGAGACCTTCGACGACCTGCTGGGCGCCGACGCCGCGGTCAGCACCCCCGTCGCGGGCCTCGATCTCTC
CGCCCTGCAGTCGGAGGGGTTCTGGTCCAGGTCGGTCACCATCTGGGGCGGCTCGTCGCAGGTGCAGCGCAACATCGTCG
CCGAGCGGGTTCTCGGCCTGCCGCGCTGA

Upstream 100 bases:

>100_bases
CGGACGGCTCCATCCCATCGTGCCGGCAGTTGGTGCGCACCGCTCACGCTGAGGTGAACGGCGGGTGTCGATCGGGCGCA
CGGGGGTGCGGGTGGCCTCC

Downstream 100 bases:

>100_bases
GTCCGGAAGGGACCATCGAAGTGTTCTTTGCGCTGACTGACGAGCAGCGTGCCCTGGGCGAGGCCGTCCGGGCCTTCCTC
GCCGGCCGTTTCGACCTCAC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MMPRWPAGGSGPDSGGRRGRGSRVPVRARRRASRPGWGMLVGRIDLLPSHTVGRGCPTRGRPIHDLARSGDQMDLTFSAA
EEAFRADLRSWLAGSVPAAWREPGFWAGVPDDEDFELRREWERRKFEAGFAGIDWPTEYGGRGGTPGMKAIYDQELALAR
APGTVNPLGLAFLAPTIMAIGTDEQKREIIRPLLRCDVIWCQGFSEPDAGSDLAALRTSGVADGDDIVVNGQKVWTTNAG
HGDRIFTMVRTEPGSQRHRGLSMLLLDMHQDGVEVRPLRQMSGATEFGEVFFTDARVPARECLGGLGNGWATAMLLLSFE
RGASGISQYTAFRQSYDEIVRAARALGRDTDPVLRQELGRRMVELECLRYHAMHVLTQVERGADLGAESSMTKLQWSETY
QDLFETFDDLLGADAAVSTPVAGLDLSALQSEGFWSRSVTIWGGSSQVQRNIVAERVLGLPR

Sequences:

>Translated_462_residues
MMPRWPAGGSGPDSGGRRGRGSRVPVRARRRASRPGWGMLVGRIDLLPSHTVGRGCPTRGRPIHDLARSGDQMDLTFSAA
EEAFRADLRSWLAGSVPAAWREPGFWAGVPDDEDFELRREWERRKFEAGFAGIDWPTEYGGRGGTPGMKAIYDQELALAR
APGTVNPLGLAFLAPTIMAIGTDEQKREIIRPLLRCDVIWCQGFSEPDAGSDLAALRTSGVADGDDIVVNGQKVWTTNAG
HGDRIFTMVRTEPGSQRHRGLSMLLLDMHQDGVEVRPLRQMSGATEFGEVFFTDARVPARECLGGLGNGWATAMLLLSFE
RGASGISQYTAFRQSYDEIVRAARALGRDTDPVLRQELGRRMVELECLRYHAMHVLTQVERGADLGAESSMTKLQWSETY
QDLFETFDDLLGADAAVSTPVAGLDLSALQSEGFWSRSVTIWGGSSQVQRNIVAERVLGLPR
>Mature_462_residues
MMPRWPAGGSGPDSGGRRGRGSRVPVRARRRASRPGWGMLVGRIDLLPSHTVGRGCPTRGRPIHDLARSGDQMDLTFSAA
EEAFRADLRSWLAGSVPAAWREPGFWAGVPDDEDFELRREWERRKFEAGFAGIDWPTEYGGRGGTPGMKAIYDQELALAR
APGTVNPLGLAFLAPTIMAIGTDEQKREIIRPLLRCDVIWCQGFSEPDAGSDLAALRTSGVADGDDIVVNGQKVWTTNAG
HGDRIFTMVRTEPGSQRHRGLSMLLLDMHQDGVEVRPLRQMSGATEFGEVFFTDARVPARECLGGLGNGWATAMLLLSFE
RGASGISQYTAFRQSYDEIVRAARALGRDTDPVLRQELGRRMVELECLRYHAMHVLTQVERGADLGAESSMTKLQWSETY
QDLFETFDDLLGADAAVSTPVAGLDLSALQSEGFWSRSVTIWGGSSQVQRNIVAERVLGLPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=368, Percent_Identity=25, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI4501857, Length=397, Percent_Identity=23.4256926952141, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI4557231, Length=356, Percent_Identity=23.5955056179775, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI187960098, Length=356, Percent_Identity=23.5955056179775, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI4557233, Length=342, Percent_Identity=27.1929824561404, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI226958412, Length=221, Percent_Identity=26.6968325791855, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI38505218, Length=139, Percent_Identity=35.2517985611511, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI226958414, Length=218, Percent_Identity=27.0642201834862, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI76496475, Length=319, Percent_Identity=26.9592476489028, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI4557235, Length=319, Percent_Identity=26.9592476489028, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI7656849, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI87081958, Length=348, Percent_Identity=19.2528735632184, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508101, Length=360, Percent_Identity=26.6666666666667, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17506239, Length=347, Percent_Identity=26.2247838616715, Blast_Score=102, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI71990804, Length=267, Percent_Identity=25.0936329588015, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17505929, Length=228, Percent_Identity=27.1929824561404, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17551932, Length=228, Percent_Identity=26.7543859649123, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI32563615, Length=243, Percent_Identity=29.2181069958848, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17569725, Length=366, Percent_Identity=23.7704918032787, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17570075, Length=409, Percent_Identity=22.7383863080685, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17534899, Length=359, Percent_Identity=23.6768802228412, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538396, Length=214, Percent_Identity=27.5700934579439, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71982178, Length=290, Percent_Identity=23.7931034482759, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562446, Length=230, Percent_Identity=28.695652173913, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24646207, Length=364, Percent_Identity=27.1978021978022, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21356377, Length=348, Percent_Identity=25, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24666513, Length=315, Percent_Identity=25.7142857142857, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281363737, Length=295, Percent_Identity=23.3898305084746, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24660351, Length=364, Percent_Identity=23.0769230769231, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355753, Length=218, Percent_Identity=28.4403669724771, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 50702; Mature: 50702

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPRWPAGGSGPDSGGRRGRGSRVPVRARRRASRPGWGMLVGRIDLLPSHTVGRGCPTRG
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCC
RPIHDLARSGDQMDLTFSAAEEAFRADLRSWLAGSVPAAWREPGFWAGVPDDEDFELRRE
CCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHH
WERRKFEAGFAGIDWPTEYGGRGGTPGMKAIYDQELALARAPGTVNPLGLAFLAPTIMAI
HHHHHHHCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
GTDEQKREIIRPLLRCDVIWCQGFSEPDAGSDLAALRTSGVADGDDIVVNGQKVWTTNAG
CCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHCCCCCCCCEEECCCEEEEECCC
HGDRIFTMVRTEPGSQRHRGLSMLLLDMHQDGVEVRPLRQMSGATEFGEVFFTDARVPAR
CCCEEEEEEECCCCCHHHCCCEEEEEECCCCCCCCCHHHHHCCCCHHHHEEEECCCCCHH
ECLGGLGNGWATAMLLLSFERGASGISQYTAFRQSYDEIVRAARALGRDTDPVLRQELGR
HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RMVELECLRYHAMHVLTQVERGADLGAESSMTKLQWSETYQDLFETFDDLLGADAAVSTP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
VAGLDLSALQSEGFWSRSVTIWGGSSQVQRNIVAERVLGLPR
CCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMPRWPAGGSGPDSGGRRGRGSRVPVRARRRASRPGWGMLVGRIDLLPSHTVGRGCPTRG
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCC
RPIHDLARSGDQMDLTFSAAEEAFRADLRSWLAGSVPAAWREPGFWAGVPDDEDFELRRE
CCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHH
WERRKFEAGFAGIDWPTEYGGRGGTPGMKAIYDQELALARAPGTVNPLGLAFLAPTIMAI
HHHHHHHCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
GTDEQKREIIRPLLRCDVIWCQGFSEPDAGSDLAALRTSGVADGDDIVVNGQKVWTTNAG
CCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHCCCCCCCCEEECCCEEEEECCC
HGDRIFTMVRTEPGSQRHRGLSMLLLDMHQDGVEVRPLRQMSGATEFGEVFFTDARVPAR
CCCEEEEEEECCCCCHHHCCCEEEEEECCCCCCCCCHHHHHCCCCHHHHEEEECCCCCHH
ECLGGLGNGWATAMLLLSFERGASGISQYTAFRQSYDEIVRAARALGRDTDPVLRQELGR
HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RMVELECLRYHAMHVLTQVERGADLGAESSMTKLQWSETYQDLFETFDDLLGADAAVSTP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
VAGLDLSALQSEGFWSRSVTIWGGSSQVQRNIVAERVLGLPR
CCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]