| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is insG [H]
Identifier: 158317288
GI number: 158317288
Start: 6705062
End: 6706339
Strand: Reverse
Name: insG [H]
Synonym: Franean1_5536
Alternate gene names: 158317288
Gene position: 6706339-6705062 (Counterclockwise)
Preceding gene: 158317289
Following gene: 158317287
Centisome position: 74.66
GC content: 72.14
Gene sequence:
>1278_bases GTGGCGGCGTGGCCTCGGTGCCGCTGGGTGGTTTGGTCACGGTTCGTGGCTTCGATGGTGACCCCGGACCAGGTGTCGGT CGGGGTGCTGGTGACGGCGGTGCCGCGTGACGCGGTCGACGAGGCCGTCGCGGCCTGTGGGGTGGGTGCGCGGCGGGCGG GCGGGAAGCTCCCACCGCATGTGACGGCGTACCTGACGTTGGCGATGTCCCTGTTTCCGGACGACGACTACGCCGAGGTC GCCCAGAAGGTGACCGGGTCGCTGGACCGGTTCGGCTGCTGGGACGCGGCGTGGGCGCCGCCGAGCGCGAGCGGGATCAC CCAGGCGCGTAAGCGGCTGGGCCGGATGGTGATGGCCGAGGTGTTCGAGCGGGTCGCGGGCCAGGTCGCGACACTGTCGA CGCGTGGCGCGTGGCTGCGGGGCCGGTTGTTGCTCGCGATCGACGGGTTTGACGTCGACGTGCCCGACACCGAGGAGAAC GCGGCCGAGTTCGGCTACGCCGGCACCGGGGAGAAGCGGTCGGCGTTCCCGAAGATCCGGGTCGTCGCGTTGGCGGAGTG CGGGACGCACGCGTTCCGGGCCGCCGAGGTCGGTGGCTGGGCGGCTGGGGAGAGGACGCTGGCCCGCGGGCTGCTGATGC GGCTGAACCGCGACGAGGTGCTGACCGCCGACCGTGGGTTCTACTCGTTCGACAACTGGGCGCTGGCCGCGGGCACCGGC GCCGACCTGATCTGGCGGGCCCCGACCGGGCTGAACCTGCCGGTCGTGCGGGTCCTGTCCGATGGCACGTTCCTCACCGT CCTGATCAACCCGGAGATCACGGGAGGTCGGCGCCGCGAGCGGCTGCTCGCCGCCGCGAAGGCCGGCGACGAGCTTGATC CGGACGAGGCGCACCTGGCCCGGGTCGTCGAGTACGACATCCCCGACCGGGCCGGTAACGGTACCGGCGAACTGGTCGTC GTGCTGACCACGATCCTCGACCCGCGTCAGGCCCGTGCCGACGAGGTCGCCGCCGGATACAACGAGCGCTGGGAGGAGGA AACCGCGAACGACCAGCTCAAGACCCATCTACGCGGCCCCGGGAGAGTCCTGCGCTCCCGGCTGCCGGACCTGGCGGTCC AGGAGATGTGGGCCTGGCTGATCGTCCAGTACGCGCTCACCGCCCTGATCGCCGGCGCCGCGGAGGCCGCCGAGATCGAC CCCGACCGGGTCGGTTTCGCCCGGACACTGCGCCTGGTCCGCCGTTCCGCCACCGGAACGGCGGACATTTCCCCCTGA
Upstream 100 bases:
>100_bases GCTGTCGGGGTGTCGGACGGGTCCAGGGTCAATGCCGTGAAGCTTAATTCGATCTTGAATGGTTGATGTTCGCTGTTCGT GGTTGGCGGGTTGGTACGGC
Downstream 100 bases:
>100_bases GGACTGGAACGCCCGGCTACCCAGGTTCCACACCGAGATCACCCGCGGGCTCAACCCGCCACGACGCCACCGCACCTGCC CCCGGGTCGTCAAACGGGCC
Product: transposase IS4 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MAAWPRCRWVVWSRFVASMVTPDQVSVGVLVTAVPRDAVDEAVAACGVGARRAGGKLPPHVTAYLTLAMSLFPDDDYAEV AQKVTGSLDRFGCWDAAWAPPSASGITQARKRLGRMVMAEVFERVAGQVATLSTRGAWLRGRLLLAIDGFDVDVPDTEEN AAEFGYAGTGEKRSAFPKIRVVALAECGTHAFRAAEVGGWAAGERTLARGLLMRLNRDEVLTADRGFYSFDNWALAAGTG ADLIWRAPTGLNLPVVRVLSDGTFLTVLINPEITGGRRRERLLAAAKAGDELDPDEAHLARVVEYDIPDRAGNGTGELVV VLTTILDPRQARADEVAAGYNERWEEETANDQLKTHLRGPGRVLRSRLPDLAVQEMWAWLIVQYALTALIAGAAEAAEID PDRVGFARTLRLVRRSATGTADISP
Sequences:
>Translated_425_residues MAAWPRCRWVVWSRFVASMVTPDQVSVGVLVTAVPRDAVDEAVAACGVGARRAGGKLPPHVTAYLTLAMSLFPDDDYAEV AQKVTGSLDRFGCWDAAWAPPSASGITQARKRLGRMVMAEVFERVAGQVATLSTRGAWLRGRLLLAIDGFDVDVPDTEEN AAEFGYAGTGEKRSAFPKIRVVALAECGTHAFRAAEVGGWAAGERTLARGLLMRLNRDEVLTADRGFYSFDNWALAAGTG ADLIWRAPTGLNLPVVRVLSDGTFLTVLINPEITGGRRRERLLAAAKAGDELDPDEAHLARVVEYDIPDRAGNGTGELVV VLTTILDPRQARADEVAAGYNERWEEETANDQLKTHLRGPGRVLRSRLPDLAVQEMWAWLIVQYALTALIAGAAEAAEID PDRVGFARTLRLVRRSATGTADISP >Mature_424_residues AAWPRCRWVVWSRFVASMVTPDQVSVGVLVTAVPRDAVDEAVAACGVGARRAGGKLPPHVTAYLTLAMSLFPDDDYAEVA QKVTGSLDRFGCWDAAWAPPSASGITQARKRLGRMVMAEVFERVAGQVATLSTRGAWLRGRLLLAIDGFDVDVPDTEENA AEFGYAGTGEKRSAFPKIRVVALAECGTHAFRAAEVGGWAAGERTLARGLLMRLNRDEVLTADRGFYSFDNWALAAGTGA DLIWRAPTGLNLPVVRVLSDGTFLTVLINPEITGGRRRERLLAAAKAGDELDPDEAHLARVVEYDIPDRAGNGTGELVVV LTTILDPRQARADEVAAGYNERWEEETANDQLKTHLRGPGRVLRSRLPDLAVQEMWAWLIVQYALTALIAGAAEAAEIDP DRVGFARTLRLVRRSATGTADISP
Specific function: Involved in the transposition of the insertion sequence IS4 [H]
COG id: COG3385
COG function: function code L; FOG: Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 11 family [H]
Homologues:
Organism=Escherichia coli, GI1790729, Length=379, Percent_Identity=25.8575197889182, Blast_Score=94, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012337 - InterPro: IPR002559 [H]
Pfam domain/function: PF01609 Transposase_11 [H]
EC number: NA
Molecular weight: Translated: 45957; Mature: 45825
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAWPRCRWVVWSRFVASMVTPDQVSVGVLVTAVPRDAVDEAVAACGVGARRAGGKLPPH CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCHHCCCCCCCH VTAYLTLAMSLFPDDDYAEVAQKVTGSLDRFGCWDAAWAPPSASGITQARKRLGRMVMAE HHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VFERVAGQVATLSTRGAWLRGRLLLAIDGFDVDVPDTEENAAEFGYAGTGEKRSAFPKIR HHHHHCCCEEEEECCCCEEECEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE VVALAECGTHAFRAAEVGGWAAGERTLARGLLMRLNRDEVLTADRGFYSFDNWALAAGTG EEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEECCCEEEECCCC ADLIWRAPTGLNLPVVRVLSDGTFLTVLINPEITGGRRRERLLAAAKAGDELDPDEAHLA CCEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH RVVEYDIPDRAGNGTGELVVVLTTILDPRQARADEVAAGYNERWEEETANDQLKTHLRGP HHHHCCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH GRVLRSRLPDLAVQEMWAWLIVQYALTALIAGAAEAAEIDPDRVGFARTLRLVRRSATGT HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCCCC ADISP CCCCC >Mature Secondary Structure AAWPRCRWVVWSRFVASMVTPDQVSVGVLVTAVPRDAVDEAVAACGVGARRAGGKLPPH CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCHHCCCCCCCH VTAYLTLAMSLFPDDDYAEVAQKVTGSLDRFGCWDAAWAPPSASGITQARKRLGRMVMAE HHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VFERVAGQVATLSTRGAWLRGRLLLAIDGFDVDVPDTEENAAEFGYAGTGEKRSAFPKIR HHHHHCCCEEEEECCCCEEECEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE VVALAECGTHAFRAAEVGGWAAGERTLARGLLMRLNRDEVLTADRGFYSFDNWALAAGTG EEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEECCCEEEECCCC ADLIWRAPTGLNLPVVRVLSDGTFLTVLINPEITGGRRRERLLAAAKAGDELDPDEAHLA CCEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH RVVEYDIPDRAGNGTGELVVVLTTILDPRQARADEVAAGYNERWEEETANDQLKTHLRGP HHHHCCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH GRVLRSRLPDLAVQEMWAWLIVQYALTALIAGAAEAAEIDPDRVGFARTLRLVRRSATGT HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCCCC ADISP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6268937; 7610040; 9278503 [H]