| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317088
Identifier: 158317088
GI number: 158317088
Start: 6422023
End: 6423201
Strand: Direct
Name: 158317088
Synonym: Franean1_5332
Alternate gene names: NA
Gene position: 6422023-6423201 (Clockwise)
Preceding gene: 158317086
Following gene: 158317089
Centisome position: 71.5
GC content: 69.13
Gene sequence:
>1179_bases GTGTCCCATACCTGGCGGGTCTCACCCGGTTCGAAGCGGACGATGCCGAACAGCAGCGGCCCGGGATCACCTCCACCTGC TCTGTCTGCTCTGTCGAACATCACGTTCCGTCCTCCTGTGTTGGATCGTGGGCGACGAGGCACCGGAACCGACCCGCGAA GGTGTTCGACCTGCGGCGGATCTGGTGCCCGCCCACCGTCCAACCGGACGGCTTGTCACGGAAGGCCGCCGGCCGTATAC GCCGAGGGTTCCGATCTATACGGAGACCGGATAGGCTCTGCGCGTCCGATCAAGGACAGACGGTCCTGTACCTACCGTCC GGAGGCGCCCGTGGTTTCCGTCCGCCGCCCGTTACCCCAGGCCCCGCCGGGACTCTGGGACCGGCCAGAGATGGCCGACG CACTCGCCCGCCGTGACATCGGCACCGTCTTCAAGATCTACCGCCAGTGGACCGGCGCGACCCAGACACAGATCGCCGCT GTCTGCGGCCTCCCGCAGTCCCACGTCAGCGAGATCTCAACCGGCCGCCGCCAGGTCACCAGCCTGGAGATCTTCGAGCG CATCGCCGACGGCATCGACATCCCCCGGGGCCGCATCGGACTTGCCGAAAGACCCGGCGCCGTCCCTGAGCCACGGACCG AGCCCGGAGCGCCCGTCGTCAACGTGCCCGGCGACATCGTGCACGTCTATCCCAGCCGGACAGCCGTCCCGTCCGAGCTG TGGCGGACGCTGTTCGCCGGCGCGCGCCACCAGGTCGACGTCCTCGTGATCGCCGGCCTGTTCCTCCCCGACGGCCACGC CGACTTCACCACCGTCCTCCGCCACAAAGGCGCGGAAGGCGTCACGATCCGCTACGCACTCGGCGACCCCGAATCACCCG CCGTCGCTCTCCGCGGCGAAGAGGAAGGGATCGGCGACGGGCTCGCCGCCCGGACCCGGATCACGCTCACCTACCTCGCG TCCCTCCGCGAGGCGCCCGGGATCGAGCTACGGCTCCACGCCACCACGCTCTACAACTCCATCTACCGGTTCGACGGCGA CATGCTCGTCAACACCCACGTGTACGGCGCCCCCGCCGCGCACTCCCCCGTCATGCACCTACGCGCCCAGTCCGGTGGCC TGTTCGACCACTACGCCGCCAGCTTCGAGCGCATCTGGGCCACCACCGAAGGAGCCTGA
Upstream 100 bases:
>100_bases GTCGTGGACGAAGAACCGCAGCGGGGTGACCTGGTAGTCGTGCCAGCCCTGTTCGATCGCGAACAGGTCAGCCGCGGCCG GCGAGTTGAAGGTGATGACC
Downstream 100 bases:
>100_bases ACCCTCTTGGCGCGAATCGACTACTTCAACGACCCGAACGCCCCCAAGGCGAACAGCGTCGTCCCCTCCGTGACCGCCGT CGTCACCGACGAGGCCGGAC
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE Family Protein; Transcriptional Regulator XRE Family
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MSHTWRVSPGSKRTMPNSSGPGSPPPALSALSNITFRPPVLDRGRRGTGTDPRRCSTCGGSGARPPSNRTACHGRPPAVY AEGSDLYGDRIGSARPIKDRRSCTYRPEAPVVSVRRPLPQAPPGLWDRPEMADALARRDIGTVFKIYRQWTGATQTQIAA VCGLPQSHVSEISTGRRQVTSLEIFERIADGIDIPRGRIGLAERPGAVPEPRTEPGAPVVNVPGDIVHVYPSRTAVPSEL WRTLFAGARHQVDVLVIAGLFLPDGHADFTTVLRHKGAEGVTIRYALGDPESPAVALRGEEEGIGDGLAARTRITLTYLA SLREAPGIELRLHATTLYNSIYRFDGDMLVNTHVYGAPAAHSPVMHLRAQSGGLFDHYAASFERIWATTEGA
Sequences:
>Translated_392_residues MSHTWRVSPGSKRTMPNSSGPGSPPPALSALSNITFRPPVLDRGRRGTGTDPRRCSTCGGSGARPPSNRTACHGRPPAVY AEGSDLYGDRIGSARPIKDRRSCTYRPEAPVVSVRRPLPQAPPGLWDRPEMADALARRDIGTVFKIYRQWTGATQTQIAA VCGLPQSHVSEISTGRRQVTSLEIFERIADGIDIPRGRIGLAERPGAVPEPRTEPGAPVVNVPGDIVHVYPSRTAVPSEL WRTLFAGARHQVDVLVIAGLFLPDGHADFTTVLRHKGAEGVTIRYALGDPESPAVALRGEEEGIGDGLAARTRITLTYLA SLREAPGIELRLHATTLYNSIYRFDGDMLVNTHVYGAPAAHSPVMHLRAQSGGLFDHYAASFERIWATTEGA >Mature_391_residues SHTWRVSPGSKRTMPNSSGPGSPPPALSALSNITFRPPVLDRGRRGTGTDPRRCSTCGGSGARPPSNRTACHGRPPAVYA EGSDLYGDRIGSARPIKDRRSCTYRPEAPVVSVRRPLPQAPPGLWDRPEMADALARRDIGTVFKIYRQWTGATQTQIAAV CGLPQSHVSEISTGRRQVTSLEIFERIADGIDIPRGRIGLAERPGAVPEPRTEPGAPVVNVPGDIVHVYPSRTAVPSELW RTLFAGARHQVDVLVIAGLFLPDGHADFTTVLRHKGAEGVTIRYALGDPESPAVALRGEEEGIGDGLAARTRITLTYLAS LREAPGIELRLHATTLYNSIYRFDGDMLVNTHVYGAPAAHSPVMHLRAQSGGLFDHYAASFERIWATTEGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42289; Mature: 42158
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHTWRVSPGSKRTMPNSSGPGSPPPALSALSNITFRPPVLDRGRRGTGTDPRRCSTCGG CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCC SGARPPSNRTACHGRPPAVYAEGSDLYGDRIGSARPIKDRRSCTYRPEAPVVSVRRPLPQ CCCCCCCCCCCCCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEHHCCCCCC APPGLWDRPEMADALARRDIGTVFKIYRQWTGATQTQIAAVCGLPQSHVSEISTGRRQVT CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH SLEIFERIADGIDIPRGRIGLAERPGAVPEPRTEPGAPVVNVPGDIVHVYPSRTAVPSEL HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCHHHH WRTLFAGARHQVDVLVIAGLFLPDGHADFTTVLRHKGAEGVTIRYALGDPESPAVALRGE HHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECC EEGIGDGLAARTRITLTYLASLREAPGIELRLHATTLYNSIYRFDGDMLVNTHVYGAPAA CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCEEEEEEEECCCCC HSPVMHLRAQSGGLFDHYAASFERIWATTEGA CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SHTWRVSPGSKRTMPNSSGPGSPPPALSALSNITFRPPVLDRGRRGTGTDPRRCSTCGG CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCC SGARPPSNRTACHGRPPAVYAEGSDLYGDRIGSARPIKDRRSCTYRPEAPVVSVRRPLPQ CCCCCCCCCCCCCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEHHCCCCCC APPGLWDRPEMADALARRDIGTVFKIYRQWTGATQTQIAAVCGLPQSHVSEISTGRRQVT CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH SLEIFERIADGIDIPRGRIGLAERPGAVPEPRTEPGAPVVNVPGDIVHVYPSRTAVPSEL HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCHHHH WRTLFAGARHQVDVLVIAGLFLPDGHADFTTVLRHKGAEGVTIRYALGDPESPAVALRGE HHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECC EEGIGDGLAARTRITLTYLASLREAPGIELRLHATTLYNSIYRFDGDMLVNTHVYGAPAA CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCEEEEEEEECCCCC HSPVMHLRAQSGGLFDHYAASFERIWATTEGA CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA