| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316872
Identifier: 158316872
GI number: 158316872
Start: 6126047
End: 6126616
Strand: Reverse
Name: 158316872
Synonym: Franean1_5116
Alternate gene names: NA
Gene position: 6126616-6126047 (Counterclockwise)
Preceding gene: 158316873
Following gene: 158316871
Centisome position: 68.21
GC content: 78.6
Gene sequence:
>570_bases GTGGGTGCGGTTCGGCGAAGCACTGTCAGTGGGTTCGGAGTGGCCGGCGACCAGAGCGCGGTGGGCCGCCAGGGCACGGT GAGCCGTCACGACGGTCCCGGTCCGCGCGGGCCGGTCCCCGGGCAGCTTCCGGGCCGGACGATGCTCCCCGCCTCGGGGC TCCCGCGGCGCTCCCGGGACGAGCTCCTCACCTCGGCCCGGCGCGGGCTGGCCGAGGCGGCCTTCACCCGCCCGGCGGCT GAGCGTTACGCGTTGGCGCATCTCGCCGCCCTGCGGGCCGCGGCCGCCGTTCTCGCCGCCCGCGCGCAGCCCCGCCCGGG TCGTCGGGGCCGCCCGGTGAGCGCGTGGCGGCTGCTCGCGCTGGTGGCCCCCGAGCTCGAGGAGTGGTCAGCGTTCTTCG CCGCGGGTGCCGGGCGGCGGGCCGCGGCCGAGGCCGGGCTCGCCGTCGTGACGACCAGGGACGCCGACGACCTCGTCCGC CAGGTGGAGATCTTCCTCGGGCTCGTCGAGGCGGCGCTCGGCGTGCCCTCCCAGCCCTCGTTGGCGCAGGCCGCGTCCCC GTGGGGTTGA
Upstream 100 bases:
>100_bases ATCTTCGAACATGCGTTCGATGTCGGGGTGGCCCGGCATCACGTGATCTGGCATCACGCGGTTCGGCATCACGCGGTTCG GCATCGGAGAGGTGATCCCA
Downstream 100 bases:
>100_bases AAACTGTTGTCAGTTGAGTGCCAGTTAGCGCTGAGTGGCGCTGTGTGGTGGTGTGAATCTCAAGGAGTGGGCGGCTGTGA ACGGGGTCAGGTATTCCACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MGAVRRSTVSGFGVAGDQSAVGRQGTVSRHDGPGPRGPVPGQLPGRTMLPASGLPRRSRDELLTSARRGLAEAAFTRPAA ERYALAHLAALRAAAAVLAARAQPRPGRRGRPVSAWRLLALVAPELEEWSAFFAAGAGRRAAAEAGLAVVTTRDADDLVR QVEIFLGLVEAALGVPSQPSLAQAASPWG
Sequences:
>Translated_189_residues MGAVRRSTVSGFGVAGDQSAVGRQGTVSRHDGPGPRGPVPGQLPGRTMLPASGLPRRSRDELLTSARRGLAEAAFTRPAA ERYALAHLAALRAAAAVLAARAQPRPGRRGRPVSAWRLLALVAPELEEWSAFFAAGAGRRAAAEAGLAVVTTRDADDLVR QVEIFLGLVEAALGVPSQPSLAQAASPWG >Mature_188_residues GAVRRSTVSGFGVAGDQSAVGRQGTVSRHDGPGPRGPVPGQLPGRTMLPASGLPRRSRDELLTSARRGLAEAAFTRPAAE RYALAHLAALRAAAAVLAARAQPRPGRRGRPVSAWRLLALVAPELEEWSAFFAAGAGRRAAAEAGLAVVTTRDADDLVRQ VEIFLGLVEAALGVPSQPSLAQAASPWG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19553; Mature: 19422
Theoretical pI: Translated: 12.12; Mature: 12.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAVRRSTVSGFGVAGDQSAVGRQGTVSRHDGPGPRGPVPGQLPGRTMLPASGLPRRSRD CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH ELLTSARRGLAEAAFTRPAAERYALAHLAALRAAAAVLAARAQPRPGRRGRPVSAWRLLA HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH LVAPELEEWSAFFAAGAGRRAAAEAGLAVVTTRDADDLVRQVEIFLGLVEAALGVPSQPS HHCCCHHHHHHHHHHCCCCHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC LAQAASPWG HHHHCCCCC >Mature Secondary Structure GAVRRSTVSGFGVAGDQSAVGRQGTVSRHDGPGPRGPVPGQLPGRTMLPASGLPRRSRD CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH ELLTSARRGLAEAAFTRPAAERYALAHLAALRAAAAVLAARAQPRPGRRGRPVSAWRLLA HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH LVAPELEEWSAFFAAGAGRRAAAEAGLAVVTTRDADDLVRQVEIFLGLVEAALGVPSQPS HHCCCHHHHHHHHHHCCCCHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC LAQAASPWG HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA